Gene Information

Name : tetA (Avi_0812)
Accession : YP_002548581.1
Strain :
Genome accession: NC_011989
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 697369 - 698562 bp
Length : 1194 bp
Strand : +
Note : -

DNA sequence : 
ATGAACAAAGCTCTCGTCGTCATTTTCGCCACCGTCGCTCTCGATGCGGTTGGGTTTGGCCTCATCTTTCCCATTTTGCC
GGCTTTGTTGCGGGAGGTGACGCATATCCAGAATGTGGCGCCCTATATTGGAATGTTGGTGGCGCTTCATGCTGTCATTC
AGTTTATCTTTGCGCCGATCCTGGGATCGCTCAGTGATCGGCTCGGTCGCCGGCCGATCCTGTTGATTTCGCTGGCGGGG
GCGGCGGTCAATTATCTGTTTCTTGCTTTTGCTGACAATCTCTGGCTGCTGCTGCTAGGGCGCGCCATTACCGGGTTGAC
CAGCGCCAATATGTCGGTGGCGACGGCCTATGTGACGGATATTTCGCGGGAAGATCAGCGGGCGCGGCGCTTTGGGCTGT
TTAATGCGATGTTTGGTCTGGGCTTCATCTTCGGGCCGATTATCGGCGGCGCGCTGGGGGATTATTGGTTGCGGCTGCCC
TTCATTGCCGCTGCCGTGCTGAATGGCGGCAATCTGCTGCTGGCGTTTTTCGTCCTGCCGGAATCCCGCATTCCGACGCG
GGAGAAGATCGATCTGGTGGCCATCAATCCGCTGCGGCCTTTGAAATGGGCGTTGTCGCTGAAAAATCTGCTGCCGATGG
TCATCCTGTTTTTCATCTTCAGCTTGACGGGTGAGGCCTATGCCACCTGCTGGGCGCTGTGGGGTGGCGATGCGTTTCAG
TGGAACGGGCTGTGGATCGGCCTGTCGCTCGGCGCGTTCGGCATCTGTCAGGCGCTTGCCCAGACCTTTCTTCCTGGCCC
GGCGGTCAAGCTGTTCGGCGAACGGATCGCCATTCTGATCGGCGTTTCCAGCGCCTGCTTTTCGTTGACCGTCATTGCCT
TTGCAACCGAAAGCTGGATGGTGTTTGCGATCATGCCGGTTTTTTCCCTGAGCGGCATTGGCGTTCCGGCCCTGCAATCG
CTCGCAACCGCCCAGGTCGATGCGGATAAGCAAGGCCAATTCCAGGGCGTGCTGGCTTCCGCCCTCAGCCTTGCCGCCAT
TATCGGCCCCCTGATGTTTTCAAGCGTCTACTTTCTCATCCGGGACTATTGGCCGGGCGGCATCTGGATGGCGGTCATTG
CCGTTTATGCCGTGAGCGTACCCTTGGTTCTGGGCCTGCGTCTCAAGACTAAAACCAGCGGGAAAGCAGTTTAG

Protein sequence : 
MNKALVVIFATVALDAVGFGLIFPILPALLREVTHIQNVAPYIGMLVALHAVIQFIFAPILGSLSDRLGRRPILLISLAG
AAVNYLFLAFADNLWLLLLGRAITGLTSANMSVATAYVTDISREDQRARRFGLFNAMFGLGFIFGPIIGGALGDYWLRLP
FIAAAVLNGGNLLLAFFVLPESRIPTREKIDLVAINPLRPLKWALSLKNLLPMVILFFIFSLTGEAYATCWALWGGDAFQ
WNGLWIGLSLGAFGICQALAQTFLPGPAVKLFGERIAILIGVSSACFSLTVIAFATESWMVFAIMPVFSLSGIGVPALQS
LATAQVDADKQGQFQGVLASALSLAAIIGPLMFSSVYFLIRDYWPGGIWMAVIAVYAVSVPLVLGLRLKTKTSGKAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 3e-57 47
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 5e-57 47
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 3e-57 47
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 3e-57 47
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 4e-57 47
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 3e-57 47
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 5e-48 42
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 1e-45 42
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 1e-45 42
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 1e-45 42
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 1e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA YP_002548581.1 tetracycline resistance protein NC_011586.7043399.p0 Protein 2e-85 57
tetA YP_002548581.1 tetracycline resistance protein NC_011595.7059241.p0 Protein 6e-86 57
tetA YP_002548581.1 tetracycline resistance protein NC_009085.4918440.p0 Protein 3e-80 57
tetA YP_002548581.1 tetracycline resistance protein NC_010410.6003291.p0 Protein 6e-86 57
tetA YP_002548581.1 tetracycline resistance protein AF090987.gene.p01 Protein 1e-63 52
tetA YP_002548581.1 tetracycline resistance protein AY264780.2.gene3.p01 Protein 4e-61 50
tetA YP_002548581.1 tetracycline resistance protein Y19114.gene.p01 Protein 1e-61 47
tetA YP_002548581.1 tetracycline resistance protein X75761.gene.p01 Protein 6e-57 47
tetA YP_002548581.1 tetracycline resistance protein CP001485.1.gene2821. Protein 2e-57 47
tetA YP_002548581.1 tetracycline resistance protein AF534183.gene.p01 Protein 2e-57 47
tetA YP_002548581.1 tetracycline resistance protein NC_010410.6002597.p0 Protein 2e-57 47
tetA YP_002548581.1 tetracycline resistance protein NC_011586.7045189.p0 Protein 1e-50 45
tetA YP_002548581.1 tetracycline resistance protein AY743590.gene.p01 Protein 8e-61 44
tetA YP_002548581.1 tetracycline resistance protein NC_010410.6002612.p0 Protein 3e-48 42
tetA YP_002548581.1 tetracycline resistance protein AF133140.gene.p01 Protein 3e-48 42
tetA YP_002548581.1 tetracycline resistance protein Y19116.gene.p01 Protein 3e-39 42
tetA YP_002548581.1 tetracycline resistance protein AF133139.gene.p01 Protein 8e-47 41
tetA YP_002548581.1 tetracycline resistance protein L06940.gene.p01 Protein 3e-40 41