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Name : smpB (Avi_1434) Accession : YP_002549030.1 Strain : Genome accession: NC_011989 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1209556 - 1210032 bp Length : 477 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCACCCAGAGGCAGCCAGCGCACCGTAAACAAGATCGTCGCGGAAAACCGCAAGGCGCGGTTTAACTATGAGATCAT CGATACCTACGAGGCTGGCATCATGCTGACCGGCACGGAGGTCAAGTCTCTGCGTGAAGGCAAGGCCAATATTGCCGAAT CCTATGCTTCGGACGAGGGTGAGGAAATCTGGCTGATCAATTCGCATCTGCCGGAATATCTTCAGGCCAACCGTTTCAAC CATGAACCGCGCCGTCGCCGCAAATTGCTGCTCAACAAGCGCGAGATCAACCGGCTGCGCGTTGCCATCAATCGCGAAGG CATGACGCTGGTGCCGTTGAAAATCTATTTCAACGAAAAAGGCCGCGCCAAGCTGGAACTGGCCTTGGCCAAGGGCAAGA AATTGCATGACAAGCGCGAGACCGAGAAGGAACGCGACTGGAACCGGCAGAAAAGCCGGTTGCTGAAGACGGGCTGA Protein sequence : MAPRGSQRTVNKIVAENRKARFNYEIIDTYEAGIMLTGTEVKSLREGKANIAESYASDEGEEIWLINSHLPEYLQANRFN HEPRRRRKLLLNKREINRLRVAINREGMTLVPLKIYFNEKGRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-11 | 47 |
