Gene Information

Name : ragA (Avi_1370)
Accession : YP_002548983.1
Strain :
Genome accession: NC_011989
Putative virulence/resistance : Virulence
Product : two component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1144917 - 1145675 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGGCATTCGGGACGGGACAAAGCATGGAAACCGGTAAAACAGGCTGTGCATCGGGCAATGCGGGCACTAATGTCGCACG
CATGAAAATACTTGTGATCGAAGACGATCTTGAAGCCGCCGCTTACATGACCAAGGCCTTCCGCGAGGCGGGGATCATGG
CCGACCACGCCAGCGATGGCGAGGCGGGCCTGTTCATGGGTTGCGAAAATACCTATGATGTGATGATCATCGACCGGATG
CTGCCGCGCCGCGATGGCTTGTCGGTGATATCAGAATTGCGCAAGCGCAGTATCAATACGCCGGTGCTGATCCTGTCGGC
GCTTGGCCAGGTGGATGACCGGGTGACCGGCCTTCGCGCTGGTGGCGACGATTACCTGCCCAAGCCCTATGCTTTTTCCG
AGCTTCTGGCCCGGGTCGAAGTGCTGGGGCGACGCAAGGGGACGCCGGAACAGGACATGATTTACCGGGTCGGTGATCTG
GAGCTGGACCGCCTGTCCCACGAAGTGCGCCGGGCGGGCAAGGAAATCCTGCTCCAGCCCCGCGAATTCCGCCTGCTGGA
ATATCTGATGAAGAATGCCGGGCAGGTGGTGACACGCACCATGCTACTGGAACATGTCTGGGACTATCATTTCGATCCGC
AGACCAATGTCATCGACGTGCATGTGTCGCGGCTGCGCTCCAAGATCGAAAAGGATTTCGACCGGCCGCTGCTGAAGACG
GTGCGCGGTGCCGGCTATATGATCAAAGACGAAAGCTGA

Protein sequence : 
MAFGTGQSMETGKTGCASGNAGTNVARMKILVIEDDLEAAAYMTKAFREAGIMADHASDGEAGLFMGCENTYDVMIIDRM
LPRRDGLSVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDMIYRVGDL
ELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVWDYHFDPQTNVIDVHVSRLRSKIEKDFDRPLLKT
VRGAGYMIKDES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_002548983.1 two component response regulator BAC0125 Protein 6e-45 46
ragA YP_002548983.1 two component response regulator BAC0347 Protein 2e-45 45
ragA YP_002548983.1 two component response regulator BAC0083 Protein 3e-44 44
ragA YP_002548983.1 two component response regulator BAC0111 Protein 1e-48 44
ragA YP_002548983.1 two component response regulator BAC0638 Protein 8e-37 44
ragA YP_002548983.1 two component response regulator BAC0308 Protein 3e-41 43
ragA YP_002548983.1 two component response regulator BAC0197 Protein 3e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_002548983.1 two component response regulator VFG1390 Protein 7e-37 41
ragA YP_002548983.1 two component response regulator VFG0596 Protein 2e-38 41
ragA YP_002548983.1 two component response regulator VFG1389 Protein 2e-32 41