Gene Information

Name : Avi_6134 (Avi_6134)
Accession : YP_002547850.1
Strain :
Genome accession: NC_011988
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG3842
EC number : -
Position : 1154309 - 1155355 bp
Length : 1047 bp
Strand : -
Note : -

DNA sequence : 
ATGACCTTTCTCGATATTCAATCCGTCAGCAAACAGTATGGTCATGTGCAGGCGTTGAACGATGTCTCGCTGGCTATTCC
CGCAGGCAGTCGCACCGCCATCGTCGGCCCTTCTGGCTCAGGGAAAACCACACTTTTGCGGTTGATCGCTGGCTTCGAAA
TGCCGGACGCGGGCCGGATCAGCCTTGGCGGCGCCCTTCAAGCCGAGCCGGGCTTCATGCAGCCAGCCCATAAACGCGGC
ATCGGCATCGTCTCTCAGGACGGCGCGCTTTTTCCCCACCTGAGTGTTGCCGACAATATCGGCTTCGGCTTTGAACGCGG
GTTGAAGAATCGCGTTGAGCGGATCAGCAATCTGGCCGAAATGGTCGAACTCGATCCCACCATGCTAACCCGGCGTCCTC
ATCAACTCTCAGGCGGCCAACAGCAACGGGTGGCGTTGGCGCGCGCCCTTGGCCGTCAACCGCGACTGATGTTGCTGGAT
GAGCCGTTTTCAGCACTCGACACCGGCTTGAGAGAAACCATGCGCAAGGCAGTGTCAAAACTGCTGGCCGCCGCCGGGAT
CACCACCATTCTTGTCACCCACGACCAGACAGAGGCACTATCCTTCGCGGATCAGCTTGCTGTATTGCGTGATGGCAAGT
TGGTGCAGGCTGGCGCGCCCAGAGAGCTTTACGAGCGACCGATTGACCGCCAAACAGCCCTTTTCCTTGGCGAAGCCATC
GTTCTCCCAGCAGTCTTATCAGCTGGGAAAGCCACTTGCGTGCTTGGAACGATCCCGGTGGAGTGTGCCAACACTGGCAA
CGGCGATATCATGTTACGACCGGAGCAGATCTGCATCAAACCGGCAATGACAGATGCAAGCAGACCAGTGCGGGTGCTGG
ATGTCGAGTTTTCAGGCGCAAGTGGAACGGTGACCTTGCAACTGCAGGGTAACGATGTGGCAATGTCGCCCCTTTCCGTG
AGGATGTCACGCCTTGATCTGCCAAGGCCAGGAGATCTGTCTTATTTGACCGTCATCGGCAGCGCCCACGTCCTGCCGCG
CGAATAA

Protein sequence : 
MTFLDIQSVSKQYGHVQALNDVSLAIPAGSRTAIVGPSGSGKTTLLRLIAGFEMPDAGRISLGGALQAEPGFMQPAHKRG
IGIVSQDGALFPHLSVADNIGFGFERGLKNRVERISNLAEMVELDPTMLTRRPHQLSGGQQQRVALARALGRQPRLMLLD
EPFSALDTGLRETMRKAVSKLLAAAGITTILVTHDQTEALSFADQLAVLRDGKLVQAGAPRELYERPIDRQTALFLGEAI
VLPAVLSAGKATCVLGTIPVECANTGNGDIMLRPEQICIKPAMTDASRPVRVLDVEFSGASGTVTLQLQGNDVAMSPLSV
RMSRLDLPRPGDLSYLTVIGSAHVLPRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 4e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Avi_6134 YP_002547850.1 ABC transporter BAC0162 Protein 1e-56 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Avi_6134 YP_002547850.1 ABC transporter VFG1206 Protein 1e-53 46
Avi_6134 YP_002547850.1 ABC transporter VFG0344 Protein 9e-57 42