Gene Information

Name : kdpE (Avi_6070)
Accession : YP_002547793.1
Strain :
Genome accession: NC_011988
Putative virulence/resistance : Virulence
Product : two component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1088423 - 1089109 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGGGCAACGCATTCTCGTCGTCGATGATGAGCCACAGATCCTCCGGTTCCTGCGCCCTGCCCTTGCGGCGGCCGG
TTACGAGGTGATTGAAGCCGATACGGGCAAGCAGGCATTGGCGCTGGTGGCAACCGCCGTGCCGGACCTACTGATCCTCG
ATCTCGGCCTGCCTGATATGGACGGCAAAGAGGTGATCGCCCAATTGCGCCACTGGAACCCGATCCCGATCATCGTGCTA
TCCGCACGGGACCGTGAGGTCGAAAAGATCGCCGCCCTTGATCTCGGTGCCGACGATTATCTCGAAAAACCGTTCGGAAT
CGGCGAATTGACGGCCCGCATTCGCGTCGCCCTTCGCCATAAACCGCAAGCGGAACCGGCCCCATCCATCATCCGCAGTG
GTGAACTCGTCATCGACATCGACCACCGCCTCGTCACAAGAGCGGATCAGCCGGTCAAGTTGACGCCGAAGGAATATGAT
CTGCTGCGCCTGCTCGCCACCCATGCGGGTCGCGTCTTGACCCATGGCGCCTTGCTGAAAGAGGTATGGGGGCCGGCCCA
TGCCCACGACCTTCAATATCTGCGCGTCTTTATTCGCCAGATCCGCGCCAAGATTGAAAAAGACGAAAGCCAACCGGCAA
TCATCCTCACCGAAGCCGGGGTGGGGTATCGCTTTGTGCTGGCGTAA

Protein sequence : 
MKGQRILVVDDEPQILRFLRPALAAAGYEVIEADTGKQALALVATAVPDLLILDLGLPDMDGKEVIAQLRHWNPIPIIVL
SARDREVEKIAALDLGADDYLEKPFGIGELTARIRVALRHKPQAEPAPSIIRSGELVIDIDHRLVTRADQPVKLTPKEYD
LLRLLATHAGRVLTHGALLKEVWGPAHAHDLQYLRVFIRQIRAKIEKDESQPAIILTEAGVGYRFVLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 3e-35 44
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 2e-35 44
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 8e-28 43
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 1e-27 42
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 2e-27 42
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 2e-27 42
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 2e-27 42
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 2e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_002547793.1 two component response regulator NC_012469.1.7685629. Protein 8e-29 41
kdpE YP_002547793.1 two component response regulator HE999704.1.gene2815. Protein 4e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_002547793.1 two component response regulator VFG1390 Protein 1e-28 42