Gene Information

Name : Arad_12478 (Arad_12478)
Accession : YP_002546898.1
Strain :
Genome accession: NC_011987
Putative virulence/resistance : Unknown
Product : transposase number 2 for insertion sequence
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 367893 - 368249 bp
Length : 357 bp
Strand : -
Note : -

DNA sequence :
GTGATTGGTCCGTCCGGCGCGGTTAAAGTCATGATCGCCACCAAGCCGGTCGACTTCCGCAAGGGTGCAGAGGGATTGGC
TGCGCTGGTGAAGGCTGAGATGGGAACTGATCCATTCTCCGGCACGATCTACGTGTTCAGGGCCAAGCGCACCGACCGCA
TCAAACTGATCTTCTGGGATGGCAGTGGCGTATGCTTGGTCGCCAAGCGGCTTGAGGATGGCGAATTCCATTGGCCCCGG
ATGCAGGACGGCGCAATGCATCTGACATCCGCGCAATTCTCGGCTTTGTTCGAGGGGCTGGACTGGAAACGCGTGCATGC
GCCGAGCGAAACGCGCACGCCTGTTCAGGCCGGATAG

Protein sequence :
MIGPSGAVKVMIATKPVDFRKGAEGLAALVKAEMGTDPFSGTIYVFRAKRTDRIKLIFWDGSGVCLVAKRLEDGEFHWPR
MQDGAMHLTSAQFSALFEGLDWKRVHAPSETRTPVQAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 2e-21 44
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 5e-19 42
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 5e-19 42
ECO103_3553 YP_003223420.1 hypothetical protein Not tested LEE Protein 6e-16 41
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 1e-18 41
Z4316 NP_289542.1 hypothetical protein Not tested OI-122 Protein 6e-16 41
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-17 41
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-17 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-17 41
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-17 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 2e-17 41
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-16 41
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-16 41
unnamed AAL08461.1 unknown Not tested SRL Protein 2e-17 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-17 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-17 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-17 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-17 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-17 41
EXB18 ABD94704.1 ISPpu14 transposase Orf2 Not tested ExoU island B Protein 7e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arad_12478 YP_002546898.1 transposase number 2 for insertion sequence VFG1665 Protein 5e-19 41
Arad_12478 YP_002546898.1 transposase number 2 for insertion sequence VFG1698 Protein 5e-18 41
Arad_12478 YP_002546898.1 transposase number 2 for insertion sequence VFG1052 Protein 1e-17 41
Arad_12478 YP_002546898.1 transposase number 2 for insertion sequence VFG1709 Protein 6e-18 41
Arad_12478 YP_002546898.1 transposase number 2 for insertion sequence VFG0792 Protein 6e-18 41