Gene Information

Name : tnp (Avi_9898)
Accession : YP_002546545.1
Strain :
Genome accession: NC_011986
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 72227 - 73132 bp
Length : 906 bp
Strand : -
Note : -

DNA sequence : 
ATGATTTCCTTCATTGACGAACACCGCTCGGTGCTCGGGGTCGAGCCGATCTGCAGGCTGCTGCCGATTGCCCCGTCCAC
CTATTATGAGGTCGTCGCCAAGCGCACGGACGTGGGTCGCCTATCGGCCCGCGAACGGAATGATATTGCCATGAAAGTCG
AGATACGCCGGGTGTTCAACGAGAACTTCCAGGTCTATGGCGTGCGGAAAGTGTGGCGACAGTTGCAGCGAGAAGGCTTC
GATATTGCTCGCTGCACCGTCGCAAGGCTCATGAGAATGATGGGTCTTCAAGGCATCATTCGTGGCAAGCCCATCAAAAC
CACCGTATCGGACAAGTCTGCCCCGTGTCCGCTCGACCGCGTCAACCGCCACTTCAAGGCTCCCGCGCCGAACATGCTCT
GGCTTTCCGATTTCACCTATGTCGCGACCTGGCAGGGCTTCGTCTACGTGGCCTTTGTAATCGATGCCTTCGCCCGCCGT
ATCGTTGGCTGGCGGGCCAGTCGAACAGCGCACGCGGGATTCGTCCTCGATGCTCTCGACCAGGCACTCCATGATCGGCG
GCCCGTCAAACGTGGCGGGCTGGTTCATCATTCCGACCGCGGCTCGCAATACGTGTCCATTCGCTATTCCGAACGACTGG
CCGAGGCGGGCATCGACCCGTCTGTCGGAAGCGTTGGCGATAGTTACGACAATGCTCTCGCCGAAACGATCAACGGTCTT
TACAAGGCCGAGGTCATCCATCGGCGAGGACCATGGCGCAACTTCGAAGCTGTGGAGTTCGCCACGCTCGAATGGGTCGA
CTGGTTCAACCACCGTCGCCTTCTGGAGCCCATCGGGAATATCCCGCCAGCCGAGGCCGAAGAACGATACTACGCCATAC
TGGACGCGCCAGCCATGGCCGCATAA

Protein sequence : 
MISFIDEHRSVLGVEPICRLLPIAPSTYYEVVAKRTDVGRLSARERNDIAMKVEIRRVFNENFQVYGVRKVWRQLQREGF
DIARCTVARLMRMMGLQGIIRGKPIKTTVSDKSAPCPLDRVNRHFKAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARR
IVGWRASRTAHAGFVLDALDQALHDRRPVKRGGLVHHSDRGSQYVSIRYSERLAEAGIDPSVGSVGDSYDNALAETINGL
YKAEVIHRRGPWRNFEAVEFATLEWVDWFNHRRLLEPIGNIPPAEAEERYYAILDAPAMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-74 64
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-63 63
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-63 63
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-59 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-80 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-80 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-80 60
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 9e-80 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-80 60
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-82 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-82 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-82 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-80 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-82 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-80 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 8e-81 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 5e-81 60
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-81 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-81 59
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-81 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 7e-79 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-56 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-56 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-42 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnp YP_002546545.1 transposase VFG1602 Protein 4e-79 58