Gene Information

Name : Avi_9846 (Avi_9846)
Accession : YP_002546508.1
Strain :
Genome accession: NC_011986
Putative virulence/resistance : Virulence
Product : two component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 36644 - 37321 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGATACTGGTCATCGAAGACGACCAAACGACGAGAAAATACCTTGTGAAGGGCTTAAGTTCCGCTGGGCATTCGAT
AGACTGCATTGGGGATGGTCGTGAGGGGCTCTCAGCAGGCTTGGACACGCGCTATGATATTCTAATTGTTGATCGGATGA
TTCCCGGCCTCGACGGCTTAAACCTTGTCAAAAGTTTGCGTGCAGCATCAGTGCGTACCCCTGTCTTGTTTCTGACGGCA
ATGAGTGGCGTGGATGATAGGGTGGAGGGTCTTGAAGCCGGGGGTGACGATTACCTCGTTAAGCCGTTCGCGTTTTCGGA
ATTAGTCGCTCGTATAAACGCCCTCGTTCGGCGCCCCCCGATTGCCGCTGAGAAGACCAAGCTGCGGGTCGGCGACCTTG
AAATGGATCTCGTCGCTAGGACTACTTCACGTGCCGGACAACTCATTGAACTATTGCCGCGAGAGTTTTCACTGCTTGAA
TTACTGATGAGGAACGAGGGACGAGTACTCACAAAAACGATGTTTCTTGAAAAAATATGGAACTTTAATTTTGATCCTCA
AAGCTCAGTCGTCGAGACGCACATCAGCCGGCTCCGGGCAAAAATAGATAAGCCTTTCAGCACATCACTTTTGCATACCG
TCAAAAACACTGGATACACGTTGCATGCTCGCGGGTAG

Protein sequence : 
MKILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGLNLVKSLRAASVRTPVLFLTA
MSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPPIAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLE
LLMRNEGRVLTKTMFLEKIWNFNFDPQSSVVETHISRLRAKIDKPFSTSLLHTVKNTGYTLHARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-40 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Avi_9846 YP_002546508.1 two component response regulator BAC0083 Protein 4e-49 51
Avi_9846 YP_002546508.1 two component response regulator BAC0125 Protein 2e-44 48
Avi_9846 YP_002546508.1 two component response regulator BAC0197 Protein 7e-45 48
Avi_9846 YP_002546508.1 two component response regulator BAC0638 Protein 2e-45 47
Avi_9846 YP_002546508.1 two component response regulator BAC0308 Protein 4e-43 44
Avi_9846 YP_002546508.1 two component response regulator BAC0347 Protein 1e-41 44
Avi_9846 YP_002546508.1 two component response regulator BAC0111 Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Avi_9846 YP_002546508.1 two component response regulator VFG0596 Protein 2e-40 45
Avi_9846 YP_002546508.1 two component response regulator VFG1390 Protein 3e-35 43
Avi_9846 YP_002546508.1 two component response regulator VFG1389 Protein 4e-30 41