Gene Information

Name : hrcR (Arad_8766)
Accession : YP_002541554.1
Strain :
Genome accession: NC_011983
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1529651 - 1530307 bp
Length : 657 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
TTGATGGAAACCGCCTTTCCCTTGACCCAGGGGCTGGCGGCGATGGCCGCCATCTCGATCTTGCCCGTCATCGCGGTCGT
GGCCACCTCCTTTACCAAGATCGCCGTCGTGCTTCTGATCGTCCGCAATGCTATCGGCATCCAGCAGACGCCGCCGAACC
TGCTGGTCTTTGCCATCGCGATCGTGCTGTCGGCCTTTGTGATGAACCCGATCCTTCAGCAGTGCTGGCAAGTCCTTCTG
CGCGCTGATGTCCACTTCGATACGATCAATGGTCTGGCGGCCGGTCTTTCGGAGGTCGGTGCGCCGTTGAAGGCCTTCAT
GATGAAATTCTCCGATGAGGAGGTTCGTCAGTTTTTCGTCAACTCGTCGCAACGCATCTGGGGCGATACCGCGACCCTGC
CTGCAAGCCCCGACGACATCACCGTCCTGACGCCGAGCTTTCTCGTCTCTGAGCTGACCCGCGCTTTCGAGATCGGTTTT
CTGCTGTATCTGCCCTTCCTGATGATCGATTTCGCGGTCTCGGCCATTCTCGTGGCCTTGGGCATGCAGATGATGTCGCC
GACGGTCGTTTCCACACCTTTCAAGCTGCTTCTCTTCGTTGGCGTCGACGGCTGGCGCCGGCTGCTTGAAGGGCTTGTGC
TTTCCTATGCGAGCTGA

Protein sequence : 
MMETAFPLTQGLAAMAAISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPILQQCWQVLL
RADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGDTATLPASPDDITVLTPSFLVSELTRAFEIGF
LLYLPFLMIDFAVSAILVALGMQMMSPTVVSTPFKLLLFVGVDGWRRLLEGLVLSYAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-39 47
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-33 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 45
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-33 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-37 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-33 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-39 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-39 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-39 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-34 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-37 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-37 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-37 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-37 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-37 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-34 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-34 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-37 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-33 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-33 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-40 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-37 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 8e-31 42
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 8e-31 42
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 8e-31 42
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 8e-31 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 8e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_002541554.1 type III secretion system protein VFG0044 Protein 1e-43 51
hrcR YP_002541554.1 type III secretion system protein VFG0188 Protein 5e-40 47
hrcR YP_002541554.1 type III secretion system protein VFG0394 Protein 5e-38 46
hrcR YP_002541554.1 type III secretion system protein VFG0519 Protein 7e-34 45
hrcR YP_002541554.1 type III secretion system protein VFG0551 Protein 3e-31 42