Gene Information

Name : Geob_0497 (Geob_0497)
Accession : YP_002535967.1
Strain : Geobacter daltonii FRC-32
Genome accession: NC_011979
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 572699 - 574030 bp
Length : 1332 bp
Strand : +
Note : KEGG: gur:Gura_4210 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: ATPase AAA

DNA sequence :
ATGCTGGCGAAGAAGATTGACCTCAGCCGCTTTCTGCCGGCAGTGGAATCGGCGCGGCCCATCAAGCTGCACGGCAAAGT
CACCCAGGTGGTGGGGCTGGTCATCGAAGGTTTCTGTCCTGAGACTGCCGTCGGTACTCTCTGCGAGATAAACTCACAGG
GGAGTGAATCCATTCCGGCGGAGGTTGTCGGCTTCAGAGAGAACAAAACCCTGCTCATGCCCCTCGGGGAATTGCGAGGC
GTGGGTCTAGGCAGTCTCATCTCTGTGCGCCGCGAAAAAGCCTCCCTGGGGGTCGGACCGGCTCTCTTGGGCAGGGTCAT
CGACGGGCTCGGGGCACCCATCGACGACCGCGGCCCGATTATCACCGGTGAAGAATATCCCATCTACGCCACTCCGGTAA
ACCCCATGAAGCGGCGTCCGATCCGCCAACCGCTCGATCTGGGTATCAGGGCCATCAACGGTCTGCTCACCTGCGGCGAA
GGGCAGCGGGTGGGGATCATGGCCGGCTCCGGGGTGGGTAAATCCACCCTGCTCGGCATGATTGCCCGCTATACGGAAGC
CGACGTCAACGTCATCGCCCTCATTGGCGAGCGGGGAAGAGAGCTGCGCGAATTCATCGAAAAAGACCTGCAGGCGGAAG
GGTTGAAAAAGTCGGTGGTAGTTGTTGCCACTTCCGATCAGCCCCCCCTGGTGCGCATGCGCGGCGCCTACATCGCCACC
ACCATTGCCGAATATTTCCAGGCCCAGGGAAAAAAGGTTCTGCTGATGATGGACTCGGCCACCCGCTTTGCCATGGCCAT
GCGCGAGGTGGGGCTGGCCATCGGCGAGCCGCCGACGACCAAAGGCTACACGCCGTCGGTTTTCGCCGCCCTGCCCAAGC
TTCTGGAGCGTACCGGAAACTTCCAGAACGGGAGTATCACCGGACTCTACACGGTGCTGGTAGAGGGGGACGACTTCAAC
GAACCTATCTCCGATGCCATGCGCAGTATCCTCGATGGCCATATCGTCCTTTCCCGGGAACTGGCCGCGAGAAACATCTA
TCCACCTATCGATGTCCTCAACAGTGCCAGCAGGGTGATGATGGATGTGACCGCCAAAAATCACCAGAAGCTGGCCGGCA
ATTTCAAAGGGGTCCTGGCCACTTACCGCCAGGCGGAGGATCTGATCAATATCGGTGCCTATAAACCGGGGAGCAATCCG
GGTATAGACTATGCCCTGGCAAAGATAGAGCACATGAACGCCTACCTGAAGCAGGATATAAAAGATGGTGTCGGGGTCGA
GAATGCAGTTATGGAGCTGGAAGCCATATTCGATGATACCATGGCTTTGTGA

Protein sequence :
MLAKKIDLSRFLPAVESARPIKLHGKVTQVVGLVIEGFCPETAVGTLCEINSQGSESIPAEVVGFRENKTLLMPLGELRG
VGLGSLISVRREKASLGVGPALLGRVIDGLGAPIDDRGPIITGEEYPIYATPVNPMKRRPIRQPLDLGIRAINGLLTCGE
GQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELREFIEKDLQAEGLKKSVVVVATSDQPPLVRMRGAYIAT
TIAEYFQAQGKKVLLMMDSATRFAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFQNGSITGLYTVLVEGDDFN
EPISDAMRSILDGHIVLSRELAARNIYPPIDVLNSASRVMMDVTAKNHQKLAGNFKGVLATYRQAEDLINIGAYKPGSNP
GIDYALAKIEHMNAYLKQDIKDGVGVENAVMELEAIFDDTMAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-105 52
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-93 50
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-92 50
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-92 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-92 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-92 50
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 5e-92 49
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-92 49
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-92 49
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-92 49
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-84 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-85 48
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-85 48
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-84 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-84 48
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-85 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-85 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 9e-85 48
escN AAC38383.1 EscN Virulence LEE Protein 7e-85 48
escN AAK26715.1 EscN Virulence LEE Protein 6e-85 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-84 48
escN AAL57542.1 EscN Virulence LEE Protein 6e-85 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-84 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-84 48
escN AAC31513.1 L0034 Virulence LEE Protein 9e-85 48
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-83 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 5e-85 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 5e-85 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-84 47
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-84 47
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-84 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-74 46
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-70 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-76 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-76 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-77 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 5e-77 44
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-72 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-72 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 8e-85 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-80 44
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 5e-80 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-80 44
invC AAS66861.1 InvC Not tested SSR-2 Protein 2e-72 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 6e-70 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-65 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 4e-65 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-65 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-65 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 8e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG2144 Protein 2e-106 53
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0390 Protein 1e-103 53
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0192 Protein 2e-107 51
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0048 Protein 6e-105 51
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG2499 Protein 2e-91 49
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0515 Protein 6e-86 48
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0730 Protein 4e-85 48
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0812 Protein 5e-85 48
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG1254 Protein 1e-95 48
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG2331 Protein 3e-86 47
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG1008 Protein 4e-73 43
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG0555 Protein 2e-65 42
Geob_0497 YP_002535967.1 ATPase FliI/YscN VFG1778 Protein 2e-69 42