Gene Information

Name : Geob_3518 (Geob_3518)
Accession : YP_002538960.1
Strain : Geobacter daltonii FRC-32
Genome accession: NC_011979
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3905761 - 3906465 bp
Length : 705 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pca:Pcar_0816 ABC-type transport system, ATPase component

DNA sequence : 
GTGAGCGACGCGAGTCTCATCAGGCTTTCCGGCATCACCAAGACCTATGGTCGAGGTCAGGCTTCCTTTCAGGCCTTGCA
GGGAATCGATCTTGATATCGACGCCGGCGAATTCGTCGCCATCATGGGCCCCAGCGGTTCCGGCAAGTCCACCACCATGA
ATATCCTCGGTTGTCTTGATACCCCCAGCAGCGGCATCTACCAATTCCAGGGGGTGCATGTGGAGAAACTTGCGCGAAAC
CAGCGCGCTCTGCTCAGGCGGCACTATCTGGGTTTCGTCTTCCAGGGATTCAACCTGCTGTCGCGCACCACTGCTCTGGA
GAATGTGGAATTGCCGTTGATCTATCGAAGGGAGCCTGCCGCTGTCCGGCATGCTGCGGCCCGTGCCGCTCTTGAACAGG
TGGGTCTGCATGGTTGGGAGCATCACACCCCTGCAGAACTGTCCGGAGGCCAGCAGCAGCGGGTTGCCATTGCCCGCGCC
ATTGTCACCAGCCCGGCGGTACTGCTGGCGGACGAGCCCACCGGCAATCTGGACACCCGTACCAGTCAAGAGATCATGCA
GCTGATCACTGATTTTAACCGCGACAAGGGCATCACCATCCTCATGGTCACCCATGAGCCGGACATAGCGGCGTATGCCA
AGCGGGTCATCCACTTTGTCGACGGACGGGTGGAGAGCGACCGACGCAACGGGGAGGCTGCCTGA

Protein sequence : 
MSDASLIRLSGITKTYGRGQASFQALQGIDLDIDAGEFVAIMGPSGSGKSTTMNILGCLDTPSSGIYQFQGVHVEKLARN
QRALLRRHYLGFVFQGFNLLSRTTALENVELPLIYRREPAAVRHAAARAALEQVGLHGWEHHTPAELSGGQQQRVAIARA
IVTSPAVLLADEPTGNLDTRTSQEIMQLITDFNRDKGITILMVTHEPDIAAYAKRVIHFVDGRVESDRRNGEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 9e-32 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-32 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Geob_3518 YP_002538960.1 ABC transporter NC_012469.1.7686878. Protein 7e-53 56
Geob_3518 YP_002538960.1 ABC transporter NC_008702.1.4606598. Protein 1e-42 48
Geob_3518 YP_002538960.1 ABC transporter CP001581.1.gene798.p Protein 7e-34 42
Geob_3518 YP_002538960.1 ABC transporter NC_012469.1.7685735. Protein 2e-33 42