Gene Information

Name : Geob_3370 (Geob_3370)
Accession : YP_002538814.1
Strain : Geobacter daltonii FRC-32
Genome accession: NC_011979
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3723132 - 3724505 bp
Length : 1374 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gur:Gura_2678 two component, sigma-54 specific, fis fam

DNA sequence : 
ATGGCTGCAACTATCATGGTTGTTGATGATGAACAGAGCATGCGAGAGTTTCTCGTGATCTTGCTTGAGAGAGAAGGGTA
CGCTGTCCAACAATGTGAGAGTGCTGCCTGCGCTTTAAGTCTCCTTCAGAGCAGCGGCTTTGATCTGGTTATTTCCGATG
TAAATATGCCTGGACTTAACGGGATGGAGCTCCTGGAGCGAATCAAGAGCACTACTCCTGAGACGGCAGTTTTAATGATT
ACTGCCTATACTACGGCAGAGCAGGCAGTGGAGGCAATGAAACTAGGGGCCTATGACTATATTGCCAAGCCTTTCAAAGT
TGAAGAAGTGAAGGTGCTGGTAAAAAATGCTCTGGAGAAGAGCAGCCTGCAGAAGGAAAACCGCCGATTGAAACACGAAG
TGCAGGAACTCTACGGTTTCAGTGGTCTGATCGGCAAGAGCAAAAAAATGCGGGAACTGTATGACCTGATCGAGAAGGTT
TCATCCAGTACAGTTAATGTTTTGATTTTAGGTGAAAGCGGCACAGGCAAAGAGCTTGTGGCAAAGGCAATCCATTACAA
CAGCTCCCGTAGCGGCAAGCCTTTTGTTGCCGTCAATTGCGGGGCCATTCCAGAAACACTCATTGAGGCTGAACTCTTCG
GACATAAAAAAGGCTCCTTTACTGGGGCCATAGCTGATAGAGCAGGCCTGTTCGAGCAGGCGGAAGGCGGCACGCTTTTT
CTCGACGAAATAGGGGAACTACCTCTGCAGTTGCAGGCCAAGCTACTGCGTGTCCTGCAAGAGCGGGAGTATCGACGTGT
CGGAGGGGCAACGGCCTTAAAGGCTGATGTCAGAATAATAGCGGCTTCTAACCGTGATATGGAGCAGCAGGTGAGAGAAG
GTTCTTTTCGCGAGGATCTGTTCTACCGATTAAATGTAGTGCCTGTGAACATGCCGCCATTGCGCGAACGAACAGAGGAT
ATCCTGCCGCTCGTGGAACATTTTTACTTCAAACTTACTCAATCCGCGGACACTGCTGGGGCCATCTCGCCAGAAGCTCT
GAAGGCCCTCATGAACTACTCTTTCCCCGGAAATGTTCGGGAATTGGAAAACTTGGTAGAGCGGTGTCTTGTATTGGGAA
ACACGACAATCACTGAAGTATCCTTGCCGTGCCAGGTGCTGAACGATAAGAGGACAGAGCCCGCTGCTGGCGATATTGAA
TTTTCTGCTGAAGGTATTAACCTTGAGGCCCATCTAGATAGTATTGAGAAACGGTTTCTAACGCAAGCCCTCACAAAGAG
CAACGGGGTTAAAACCAAGGCGGCGTCCCTCCTTGGATTGACCTTTAGATCCTTCCGTTATCGCTTGGCTAAATTCGGAA
TGGATGAGGAATAA

Protein sequence : 
MAATIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSGFDLVISDVNMPGLNGMELLERIKSTTPETAVLMI
TAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEKSSLQKENRRLKHEVQELYGFSGLIGKSKKMRELYDLIEKV
SSSTVNVLILGESGTGKELVAKAIHYNSSRSGKPFVAVNCGAIPETLIEAELFGHKKGSFTGAIADRAGLFEQAEGGTLF
LDEIGELPLQLQAKLLRVLQEREYRRVGGATALKADVRIIAASNRDMEQQVREGSFREDLFYRLNVVPVNMPPLRERTED
ILPLVEHFYFKLTQSADTAGAISPEALKALMNYSFPGNVRELENLVERCLVLGNTTITEVSLPCQVLNDKRTEPAAGDIE
FSAEGINLEAHLDSIEKRFLTQALTKSNGVKTKAASLLGLTFRSFRYRLAKFGMDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-74 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-74 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Geob_3370 YP_002538814.1 Fis family transcriptional regulator BAC0089 Protein 6e-94 44
Geob_3370 YP_002538814.1 Fis family transcriptional regulator BAC0467 Protein 8e-76 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Geob_3370 YP_002538814.1 Fis family transcriptional regulator VFG1214 Protein 9e-82 44
Geob_3370 YP_002538814.1 Fis family transcriptional regulator VFG0116 Protein 4e-64 44
Geob_3370 YP_002538814.1 Fis family transcriptional regulator VFG1249 Protein 6e-76 42