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Name : CTN_1212 (CTN_1212) Accession : YP_002534754.1 Strain : Thermotoga neapolitana DSM 4359 Genome accession: NC_011978 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1174381 - 1175658 bp Length : 1278 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATAGACATAAAACTCATCAGGCAGGATCCCGATTTTGTGAAAGATGCCCTGAAAAAACGTGGTGAAGACACAGATAT CATAGATGAGATACTGAAGATCGACAGCGAGTGGCGTTCTGTGACCACAGAACTCAACGAACTGAGGGCAAAAAGGAACG ACATTTCCAAGAATGTGGCCAAGTTGAAGAAGGAAGGAAAGTCCTCCGAAGCGAACGCGCTGATCGAGGAAGGAAAAAGA ATCGGTGAGGAAATAAAGTCACTCGAGGAGAAAGAAAAAGAACTTCAGTCAAAGCTAAGAGATCTTCTCCTCAGAGTGCC GAACATTCCACATGAATCCGTTCCCGTTGGTTCCGATGAGTCTCAAAACGTTGAAGTGAGAAGGTGGGGCGAACCGAGGA AATTCGACTTTGCTCCCCTGGCACACTGGGACCTCGGACCTGCCTGGGGACTCATGGACTTCGACAGGGCCTCCAAACTC AGCGGCTCCAGGTTCACGGTGATGTACGGGAAACTTGCAAGACTGGAGAGGGCCCTCATAAACTTCATGCTCGACGTTCA TACAAGAGAACACGGTTACACGGAGGTGTGGGTTCCACATCTTGTGAAAAGAGAAACGATCACGATCACAGGGCAGCTTC CAAAGTTCGAAGAAGAGCTTTACCTGACAGAAAAAGACGACCTGTTTCTTATACCAACAGCAGAAGTTCCTCTGGTAGCC CTCCACAGTGGAGAGATCCTTGAAGAAAAAGACCTTCCAAAGAAATACGTTGCCTACACTCCATGTTACAGAAGAGAAGC CGGCAGTTACGGAAAAGATGTACGTGGAATGATCAGGCAGCACCAGTTCGACAAGGTGGAGCTCGTCTGGATAACCACAC CGGAGAGATCCTTCGACGATCTGGAACAACTGGTAAGAGATGCCGAAACCATCCTTCAAAGGCTGGGGCTTCCCTACAGG GTCGTCTCTCTCTGCACGGGAGATCTTGGATTCGCTTCCGCCAAAACGTATGACATAGAGGTGTGGCTTCCGTCCTACAA CGCATACAAGGAGATCTCATCCTGCAGTAACGTGACGGACTTTCAGGCAAGAAGGGGTAACATGAGGTACAGAAGAAGGT CAGACGGCAAACTCACACTCGTTCATACCCTTAACGGCTCAGGTATCGCGGTGGGAAGAACGCTGGTCGCGATTCTGGAG AATTACCAGCAGCCAGATGGAAGCGTGAAGGTTCCAGAGGCACTAGTTCCTTACACGGGATTTGAGGTGATACCGTAG Protein sequence : MIDIKLIRQDPDFVKDALKKRGEDTDIIDEILKIDSEWRSVTTELNELRAKRNDISKNVAKLKKEGKSSEANALIEEGKR IGEEIKSLEEKEKELQSKLRDLLLRVPNIPHESVPVGSDESQNVEVRRWGEPRKFDFAPLAHWDLGPAWGLMDFDRASKL SGSRFTVMYGKLARLERALINFMLDVHTREHGYTEVWVPHLVKRETITITGQLPKFEEELYLTEKDDLFLIPTAEVPLVA LHSGEILEEKDLPKKYVAYTPCYRREAGSYGKDVRGMIRQHQFDKVELVWITTPERSFDDLEQLVRDAETILQRLGLPYR VVSLCTGDLGFASAKTYDIEVWLPSYNAYKEISSCSNVTDFQARRGNMRYRRRSDGKLTLVHTLNGSGIAVGRTLVAILE NYQQPDGSVKVPEALVPYTGFEVIP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-98 | 52 |
