Gene Information

Name : RSKD131_2279 (RSKD131_2279)
Accession : YP_002526640.1
Strain :
Genome accession: NC_011963
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2309338 - 2310186 bp
Length : 849 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGAGACGCTCCTCTTCCCGTTCCAGTTTCCCTTCATGCAGAACGCCTTCCTCGTCTGCCTGCTGGTGGCGGTGCC
GACGGCGCTCCTCTCCTGCCTCCTCGTCCTGAAGGGCTGGGCGCTGATGGGCGATGCCATCAGCCACGCCATCCTGCCGG
GCGTGGTGCTGGCCTATATCGCGGGCGTGCCGCTGCTGGTGGGCGCCTTCGGCGCGGGCATGGCCTGCGCGCTGGCCACC
GGGTTCCTCGCGGGCAACAGCCGGGTCAAGCAGGACACGGTGATGGGCGTGGTCTTCGCCGGCATGTTCGGGCTGGGGCT
GCTGCTCTACACCTCCATCGAGACGGACGTGCATCTCGACCATATCCTCTTCGGCAACATGCTGGGCGTGGGACCCGAGG
ATCTTCTGGTGTCGGGGGCGATCTCGGCGGGCGTGACGGGGGCGCTCCTGCTCACCTGGAAGGATCTCCTCCTCCATGCG
TTCGATCCGGCGCAGGCGCGGGCCTCGGGCCTCCGGGTGGGGCTGCTGCACTACGGCCTTCTGACCGCGCTCGCCCTGAC
CATCGTGGCCACGCTGACGGCCACCGGCCTCATCCTCGCCGTGGGCCTCCTGATCGCGCCGGGGGCCATCGCCTTCCTGA
CGGTGCGGCGCTTCGGGCCGATGCTGATCGTGGCCGTGGCGGTCTGCCTTGCGGCGATGCTGGCCGGCACCTATGCGAGC
TTCTTCCTCGACAGCGCCCCTGCCCCCACCATCATCCTGATCCTGAGCGGGACCTTCGTGCTGGCCTTCCTCGCCCGGCT
GCGGCGCAACCGGCGCGCGGCGCTCAGCGCGGCAGCCCCGCCTCGCTGA

Protein sequence : 
MTETLLFPFQFPFMQNAFLVCLLVAVPTALLSCLLVLKGWALMGDAISHAILPGVVLAYIAGVPLLVGAFGAGMACALAT
GFLAGNSRVKQDTVMGVVFAGMFGLGLLLYTSIETDVHLDHILFGNMLGVGPEDLLVSGAISAGVTGALLLTWKDLLLHA
FDPAQARASGLRVGLLHYGLLTALALTIVATLTATGLILAVGLLIAPGAIAFLTVRRFGPMLIVAVAVCLAAMLAGTYAS
FFLDSAPAPTIILILSGTFVLAFLARLRRNRRAALSAAAPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-53 63
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-53 63
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-53 63
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-53 63
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-53 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_2279 YP_002526640.1 ABC transporter BAC0352 Protein 8e-54 63
RSKD131_2279 YP_002526640.1 ABC transporter BAC0442 Protein 4e-42 56
RSKD131_2279 YP_002526640.1 ABC transporter BAC0441 Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_2279 YP_002526640.1 ABC transporter VFG0528 Protein 8e-54 63