Gene Information

Name : RSKD131_2276 (RSKD131_2276)
Accession : YP_002526637.1
Strain :
Genome accession: NC_011963
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2306711 - 2307604 bp
Length : 894 bp
Strand : +
Note : -

DNA sequence : 
ATGAACATGCGACGGATCGGATGGGCCGCCTCGATGGCGACGCTCCTCATGGCAGGGCCGGCGCTCGCCGACCGGCTGAA
GGTCGCCACGACCTTCACGGTCATCGCCGACATGGCGCAGAACGTGGCGGGCGACGCGGCCGAGGTGGTGTCGATCACCC
GCCCCGGCGCCGAGATTCACGGCTATGAGCCCACGCCGCGCGATATCGTGCGCGCCTGGGACGCGGACCTGATCCTCTGG
AACGGGCTCAATCTCGAGCTCTGGTTCGAGCAGTTCCTCTCCAACCTGAAGGATGTGCCGTCGGTGACGGTGAGCGACGG
GATCGAGCCGCTGGCGGTCGCCGGCGGCGAATATCGCGGCAGGCCCAATCCGCACGCCTGGATGGGCCTCGACAATGCCA
TGATCTACATCGACAACATCGCCCGCGCGCTGGCCGAGGCCGATCCGTCCCATGCCGAGACCTATCGGGCCAATGCGGCA
GGCTACAAGGAGCGGCTCCGGGCGACCATCGGGCCCCTGCGCGACCGGATCGCGGCCCTGCCCGAGGAGCGGCGCTGGCT
CGTGACCTGCGAGGGCGCCTTTTCCTATCTCGCCCGCGACTTCGGGCTGAAGGAGCTCTATCTCTGGCCGATGAACACCG
ATCAGGTCGGCACGCCGCAGCAGGTGCGCACGGTGATCGACGGGGTGAAGGCCCACGCGATCCCGGCCGTCTTCTGCGAG
AGCACGGTGAACAACGCCCCCGCCCGGCAGGTCGCGCGCGAGACGGGGGCGGCTTACGGCGGCATGCTCTATGTGGACAG
CCTGAGCCCGCGCGACGGGCCAGTGCCGACCTATCTCGACCTCCTGCGGGTGACGGCCGAGACCATCGCGAACGGGCTGG
AGGGCACGAGATGA

Protein sequence : 
MNMRRIGWAASMATLLMAGPALADRLKVATTFTVIADMAQNVAGDAAEVVSITRPGAEIHGYEPTPRDIVRAWDADLILW
NGLNLELWFEQFLSNLKDVPSVTVSDGIEPLAVAGGEYRGRPNPHAWMGLDNAMIYIDNIARALAEADPSHAETYRANAA
GYKERLRATIGPLRDRIAALPEERRWLVTCEGAFSYLARDFGLKELYLWPMNTDQVGTPQQVRTVIDGVKAHAIPAVFCE
STVNNAPARQVARETGAAYGGMLYVDSLSPRDGPVPTYLDLLRVTAETIANGLEGTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-87 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-87 63
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-87 63
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-87 63
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-87 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_2276 YP_002526637.1 periplasmic solute binding protein BAC0349 Protein 2e-87 63
RSKD131_2276 YP_002526637.1 periplasmic solute binding protein BAC0439 Protein 7e-87 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_2276 YP_002526637.1 periplasmic solute binding protein VFG0525 Protein 2e-87 63