Gene Information

Name : RSKD131_1817 (RSKD131_1817)
Accession : YP_002526178.1
Strain :
Genome accession: NC_011963
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1851578 - 1852858 bp
Length : 1281 bp
Strand : -
Note : -

DNA sequence : 
TTGGAGCTCTTCATCCTGTTCGGAAGCTTCGTCTTCCTTCTCCTGATCGGCACGCCCGTCGCCTTCTGCCTCGGCGTGTC
GAGCTTCCTCACCGTGCTCTATCTGGGCCTGCCGCCGGTCGTGGTGTTCCAGCGCCTCAACTCGGGCGTCTCGGTCTATG
CGCTGATGGCCATCCCCTTCTTCATCTATTCGGGCGATCTGATGGTGCGGGGCGACATCGCCCGACGGCTCGTGGCGCTG
GCAGGCGCGCTGGTCGGCCACCTCCGGGGCGGGCTCGGACAGGTGAACGTCGTGGCCTCGGTCATGTTCGGCGGCGTCTC
GGGCTCGGCCGCGGCGGATGCCTCGGCGGTGGGCGGCCTCATGGTGCCGCAGATGAAGGCCCGCGGCTACGGCGTCGACT
ATGCCGTGAACCTGACCGTCGTGGGCTCGATCATCGCGCTGATGATCCCGCCCTCGCACAACATGATCATCTATTCCATC
GCCGCGGGCGGCCGGATCTCGATCGCGGACCTCTTCACGGCAGGCATCATCCCGGGCCTCCTGCTCGCGCTGGGGCTGAT
GGTGGCGGCCTATTTCGTGGCCCGCAGCCGCGGCTATCCGACCGAGCGCTTTCCGGGGCTGCGCGCGCTCGGCGCCATCT
TCGTGAGCGCCGTGCCGGGGCTCATCCTCGTCGCGCTGATCTTCGGCGGCGTGCGCTCGGGCATCTTCACCGCCTCGGAA
AGCGCCAACATCGCCGTTGTCTATGCGCTGCTCGTCACCATCCTGATCTACCGCACCCTCACCTGGCCCGAGTTCGTCCA
TGCCACCATCGGCGCGGTGCGCACGACGGCCATGGTGCTGCTCGTGATCGGCTGCGCCGCCTCGTTCGGCTGGCTTCTGG
CCTATCTCAAGGTGCCGACGGCGCTCGTGGCCTTCATGCAGGGGCTGTCGGACAATCCGCTGGTGATCCTGCTGCTCATC
AACGTGGCGCTCCTCGTGCTCGGCACCTTCATGGACATGTCGCCGCTGATCGTCATCACGACGCCGATCTTCCTGCCGGT
GGCGCAGGCCTTCGGGGTGGATCCGGTGCATTTCGGCGTCATCCTGATCCTGAACCTCGGGATCGGCCTCTGCACGCCGC
CCGTCGGTGCGGTGCTCTTCGTGGGCTGCGCCGTGGGGCGGATCTCGATCTGGACGGCGATGCGCACGATCTGGCCCTTC
TACGGGGCGGCCCTCGCCGTCCTGCTGCTCGTGACCTACATCCCGGCGCTGTCGCTCTGGCTGCCGGCCCAATTCCGCTG
A

Protein sequence : 
MELFILFGSFVFLLLIGTPVAFCLGVSSFLTVLYLGLPPVVVFQRLNSGVSVYALMAIPFFIYSGDLMVRGDIARRLVAL
AGALVGHLRGGLGQVNVVASVMFGGVSGSAAADASAVGGLMVPQMKARGYGVDYAVNLTVVGSIIALMIPPSHNMIIYSI
AAGGRISIADLFTAGIIPGLLLALGLMVAAYFVARSRGYPTERFPGLRALGAIFVSAVPGLILVALIFGGVRSGIFTASE
SANIAVVYALLVTILIYRTLTWPEFVHATIGAVRTTAMVLLVIGCAASFGWLLAYLKVPTALVAFMQGLSDNPLVILLLI
NVALLVLGTFMDMSPLIVITTPIFLPVAQAFGVDPVHFGVILILNLGIGLCTPPVGAVLFVGCAVGRISIWTAMRTIWPF
YGAALAVLLLVTYIPALSLWLPAQFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-34 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-34 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_1817 YP_002526178.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-34 41