Gene Information

Name : RSKD131_1370 (RSKD131_1370)
Accession : YP_002525731.1
Strain :
Genome accession: NC_011963
Putative virulence/resistance : Virulence
Product : protein FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1402703 - 1404031 bp
Length : 1329 bp
Strand : +
Note : -

DNA sequence : 
ATGAACGCGCTGATCGAGGGGCTCGGCCACCATCTCGCCCAGCTGCCGCACCGGCAGGCCCCGCACGTCACGGGCCGCGT
GGTGCGCTACGACGGGCTTCTGCTGGAATGCGCAGGTTTCCCCGCGAGCCCCGGCGCGCTCTGCCGTGTGGCCACCGAGG
ATGGCCGCGAGGTGCAGGGCGAAGTGATCGGCTTCGCGCAGGGCCGCAACCTGCTCTTCCTCGACCAGATGCGGGCGCCG
GTGATCGCGGGCGCACGGGTGCGCCTCGTGCCCGGCGGGCAGATGGCCGCCGTGGGATCCGGGCTCCTCGGCCGGGTGAT
CGATGCCGAGGGCGCACCGCTCGACGGCCTGCCCGCCCCCGACTGCACGGGCGAATGGCCGCTCGCGGGCCGGGTGATGA
ACCCGCTCGCCCGCACGGCCGTGAACCGCCCGCTCGACGTGGGGGTGCGCGCGATCAACGCGGCGCTGACGGTGGGACAG
GGCCAGCGGATCGGCATCGTCGCGGGCTCGGGCGTGGGCAAGTCGGTGCTCATCGAGATGATGACGCGCTACACCGCGGC
CGACGTGATCGTCGTGGGGCTGATCGGCGAGCGCGCGCGCGAGGTGGGCGCCTTTGCGGCCTCGGTCATGCAGGGCGAGG
CCGCGCGGAAGCTCTGCATGGTGGCGGTGCCCGCCGACCGTTCGCCGCTCCTGCGGCTGCGGGCCGCGCGCCGGGCCACC
GCCATCGCCGAGCATTTCCGCAGCGAGGGCAAGCAGGTTCTCCTCATCATGGACAGCCTCACCCGCGTAGCCCATGCACA
GCGCGAGGTGGGGCTCGCCCTCGGCGAGCAGCCGACGGCCAAGGGCTATCCGCCCTCGGTCGTCTCGATGATCCCGGGCC
TGATCGAGCGCACGGGCCCGGGCCTTCCGGGCGAGGGCGCCATCACCGCGATCTATACCGTGCTGGCCGACGGCGACGAC
ACGACGAACGATCCGGTGGTCGACACGGCACGTGCCATCCTCGACGGCCATTTCGTGCTGTCGCGGCGGCAGACCCAGAT
GGGGCTCTATCCGGCGATCGACATTCCCCATTCGGTCAGCCGGACCATGAACGACGTGGTGGACGACCGCCACCGGCGCG
CCGCGGCCCGTCTGCGCCAGCTCATCGCGCTCTATTCCGACAACCGGGATCTGATGCTGATGGGCGGCTATGCGGCCGGG
CAGGATGCCGATCTCGATCAGGCGGTGCAGCTCTGGCCGAGGATCCGGGCGCTGATCGGTCAGGGGCCGCACGAGCCCGC
GGATTTCGAGGCGAGCCGCGCGGCCCTTCTCGAGCTGACGGGGCTCTGA

Protein sequence : 
MNALIEGLGHHLAQLPHRQAPHVTGRVVRYDGLLLECAGFPASPGALCRVATEDGREVQGEVIGFAQGRNLLFLDQMRAP
VIAGARVRLVPGGQMAAVGSGLLGRVIDAEGAPLDGLPAPDCTGEWPLAGRVMNPLARTAVNRPLDVGVRAINAALTVGQ
GQRIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVAVPADRSPLLRLRAARRAT
AIAEHFRSEGKQVLLIMDSLTRVAHAQREVGLALGEQPTAKGYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDD
TTNDPVVDTARAILDGHFVLSRRQTQMGLYPAIDIPHSVSRTMNDVVDDRHRRAAARLRQLIALYSDNRDLMLMGGYAAG
QDADLDQAVQLWPRIRALIGQGPHEPADFEASRAALLELTGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-56 46
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 4e-56 46
escN AAK26715.1 EscN Virulence LEE Protein 7e-56 46
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-56 46
escN AAL57542.1 EscN Virulence LEE Protein 7e-56 46
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-56 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-56 46
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-56 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-56 46
escN AAC38383.1 EscN Virulence LEE Protein 2e-56 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-56 46
escN AAC31513.1 L0034 Virulence LEE Protein 2e-56 46
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-54 45
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-56 44
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-62 43
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-60 43
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-60 43
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-60 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-59 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-59 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-51 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-51 43
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-51 43
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-51 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-51 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-60 42
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 8e-57 42
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-60 42
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-58 42
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-58 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 2e-55 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 2e-55 42
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 8e-59 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-58 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-58 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-58 42
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-56 41
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-56 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-57 41
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-57 41
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-57 41
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 1e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_1370 YP_002525731.1 protein FliI VFG2331 Protein 3e-83 52
RSKD131_1370 YP_002525731.1 protein FliI VFG1254 Protein 2e-82 50
RSKD131_1370 YP_002525731.1 protein FliI VFG2499 Protein 5e-83 49
RSKD131_1370 YP_002525731.1 protein FliI VFG0812 Protein 9e-57 46
RSKD131_1370 YP_002525731.1 protein FliI VFG0730 Protein 1e-56 46
RSKD131_1370 YP_002525731.1 protein FliI VFG0390 Protein 2e-65 44
RSKD131_1370 YP_002525731.1 protein FliI VFG0192 Protein 4e-67 44
RSKD131_1370 YP_002525731.1 protein FliI VFG0048 Protein 3e-61 43
RSKD131_1370 YP_002525731.1 protein FliI VFG0515 Protein 1e-51 43