Gene Information

Name : fliP (trd_A0034)
Accession : YP_002523316.1
Strain :
Genome accession: NC_011961
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 29242 - 30057 bp
Length : 816 bp
Strand : +
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103

DNA sequence : 
GTGGAGCGAACCATGCGGGACGAGGCGCGACTGCGAGCGAGCGAACCGAAGGGACCACTGCGGTGGGGGGCGCTCGCCGC
TGGTGTCCTGGGAGCGATGGCGAGCAGCGCCTGCGCCTTCCAGGCAACGATGGGCTCCACCCAGATCCAGGTGCAGAGCC
AAGGAGGAAACAGCACCGGCAACCCGGTCGCAGCAGGCCTGGAACTAGTCTTCTTGCTGACGCTGGTCAGTCTGCTGCCG
ACGATCCTGATCGTGATGACCTCGTTCACGCGGATCGTGATCGTGCTCTCCTTCGTCCGCTCGGCGATCGGCGTACCGCA
ACTTCCGCCGAACCAGGTCCTGATCGGGCTGGCACTCTTCCTGACCGTATTCGTCATGGCTCCGACTTGGCAAGCGGTCA
ACCGCGATGCACTCCAACCGTACCTGCGGGGCGAGATCAACCAGCGGACAGCACTGGAGCGCGGGCTGCAGCCGCTGCGC
ACCTTCATGTTCCGACAGACACGGGAGCGCGACATCGCGCTCTTCATGAGCCTCGGCAATTTGCCGCGCCCGCGGACACC
GGAGGATGTCCCGACCTGGGTGCTGGTCCCCGCCTTCATCCTGAGCGAGCTGAAGACTGCGTTTACCATGGGATTCGTCC
TCTTCATCCCCTTCCTGGTCATCGATTTGATCGTCTCCAGCACGCTGATGGCGATGGGGATGATCATGGTTCCGCCGGTC
GTCATCTCGTTACCGTTCAAGCTATTGCTCTTCGTCATGGTGGACGGTTGGGACCTTCTCGTCCGCTCCCTGGTCGTCAG
CTTCGGCACTGGTTAG

Protein sequence : 
MERTMRDEARLRASEPKGPLRWGALAAGVLGAMASSACAFQATMGSTQIQVQSQGGNSTGNPVAAGLELVFLLTLVSLLP
TILIVMTSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVMAPTWQAVNRDALQPYLRGEINQRTALERGLQPLR
TFMFRQTRERDIALFMSLGNLPRPRTPEDVPTWVLVPAFILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPV
VISLPFKLLLFVMVDGWDLLVRSLVVSFGTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-27 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-27 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-27 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-26 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-21 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 6e-20 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 6e-20 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-20 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002523316.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-33 45
fliP YP_002523316.1 flagellar biosynthetic protein FliP VFG0188 Protein 4e-33 44
fliP YP_002523316.1 flagellar biosynthetic protein FliP VFG0394 Protein 3e-31 41