Gene Information

Name : RSKD131_4544 (RSKD131_4544)
Accession : YP_002523257.1
Strain :
Genome accession: NC_011960
Putative virulence/resistance : Virulence
Product : polysaccharide ABC transporter ATPase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 70272 - 71093 bp
Length : 822 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGAGCTGCGCAACGTCTCGAAGAGCTACGTCCTGAACGGGACGCGCAAGGTGGTGGCGCGCGACCTGAACTTCAC
CTTCCCCTCGGGCGAGAGCGTGGGGCTTCTGGGGCGCAACGGGGCGGGCAAGTCGAGCCTCCTGCGGATGCTCGCGGGCA
CCATGCTGCCCGACACGGGCGAGATCCTTTCCAGCGGCACGATATCCTGGCCGGTGGGCTTCTCGGGCAGCTTCCACCCC
GAACTCACCGGGGCGCAGAACGTGCGCTTCGTGGCCCGCCTCTACGGCGTCGATACCGAGGCGATGATCGCCTTCGTGCG
CGACTTCGCCGAGATCGGGCAGCATTTCCACCTGCCGGTGCGCAGCTATTCCTCGGGGATGCGCTCGCGGCTGGCCTTCG
GCATCTCGATGGCGGTGCCCTTCGACACCTATCTCATCGACGAGGTGACGGCGGTGGGGGACGCGGCCTTCAGCGCCAAG
AGCAATGCGATCCTGCGCGCGCGGCTGGAGGAGAGCGGGGCGGTGATCGTCTCGCACTCCATGCCGCTCTTGAAGAAGCT
CTGCCGCTCGGGGGCGGTGCTCCACGACGGGCAGCTCTTCTATTACGAGCGCATCGAACAGGCGATCCGCCACCACGAGA
GCATGATGCGCGGCGCCCTGCCGCGCTGGATGCGGGGCGATCTCGACGAGGGCGAGGGCGAAGAGGCGGGCGCCGCCGCC
CCCGGCCCCCGGGCCCGCGCCCGGGCCGGTGCGGCGCGAGCCGGCGGCGGGCGGGCCGCAAGGCCCGGCCCGGCTTCCGG
GACGAGCGAGCCCCGAGGCTGA

Protein sequence : 
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHP
ELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAK
SNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAA
PGPRARARAGAARAGGGRAARPGPASGTSEPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-44 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-45 46
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_4544 YP_002523257.1 polysaccharide ABC transporter ATPase VFG1449 Protein 7e-45 48
RSKD131_4544 YP_002523257.1 polysaccharide ABC transporter ATPase VFG0258 Protein 1e-46 44
RSKD131_4544 YP_002523257.1 polysaccharide ABC transporter ATPase VFG0696 Protein 1e-46 43
RSKD131_4544 YP_002523257.1 polysaccharide ABC transporter ATPase VFG2563 Protein 3e-45 41