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Name : lysS (trd_0874) Accession : YP_002522097.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 853815 - 855404 bp Length : 1590 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGCCGCTCAACGATCAGCAGCGCGCACGGCTCGAAAAGCTCCGCGAACTACGCCAACAGGGTATCGACCCGTATCCGGC TCGTTCGCATCGCCAATTGACTGCAGCGCAGGCGCACGCTGTCTTCACCGAGCGCGAGCCGCACCTCGGTGGCCAGCCCG ATCCCGAACCAGTCACGCTGGCTGGCCGCGTCGTCTCCGTTCGCGACATGGGACGGACCGTCTTCAGTCATATCCGGGAC GGGTCAGGAGCGATCCAACTCTTCTTGCGCCGCGAGTTCGTCGGTGATGACCAACTGGCATGGTTCAAGCGCTACGTCGA CCTGAACGATTTCGTCGAAGCCGATGGGCATCTCTTCCGCACACGAACCGGTGAAGTTTCTCTCGAGGTGCACGCGCTCC GACTGCTGAGCAAGGCGCTCAATCCGCCACCGGACAAGTGGCACGGGTTGACCGACGTCGAAACGCGCTACCGCCAACGC TATGTCGACCTCATGGCCAACCCGGACACGCGACAAATCTTCGTGACACGGGCCCGCGTCATTCGCGCGATCCGTCAGTA CCTGGACGAACGCGGCTTTCTCGAGGTCGAGACACCCACGCTCCAACCGATCTATGGCGGTGCTGCAGCCCGCCCCTTCA CCACCTACTACCATGCTCTGGATCAGACCTTCTATTTGCGTATTTCCGACGAACTCTATCTCAAGCGGCTTCTCGTCGGT GGCTACGAGCGCGTTTACGAGATTTGCAAGGACTTTCGCAATGAAGGGATCGATGCTCGGCATAACCCTGAATTCACCAT GCTCGAGTTTTATGCAGCGTATGCCGATTACCACGATATCATGCAGATGTGCGAGGAATTGATCGTTTTCGCAGCACGCG AGGCCCTCGGCACTTTGACCTTCCAGTGGGGAGACACGGTTATCGACTTGACACCGCCGTGGGCCCGAATGAGCTTGCGC GAGGCACTACTTCGTTTCACCGGAATCGATTTTCTGGAAGTGACCGACCAGCCGACACTCTATGCGCGCGCCCGAGCTCT CGGAGCCGACGTGGAGCCCACCACGGTCTGGCCTCGCATTCTCGACGAACTCCTCAAGACCTTCGTTCGGCCGCGTCTCG TCCAACCGACGTTCATCTACGATTACCCTGTGGCTCTGTCACCGCTCGCTAAGCGCAAGCCGGAGGATCCACGCCTCGTC GAGCGTTTCCAACTCTTCGTTGGGGGGCTGGAACTCGCGAACGCATATACCGAGTTGAACGATCCGCTCGATCAGTTGTA CCGCTTCCTCGAGCAAGCACGCGACCGGGCGCAAGGAGACGAGGAAGCGATGCCGATCGACGAGGACTTCATCAACGCCT TGATGTACGGTATGCCACCAACGGGCGGATTCGGTCTCGGCATCGACCGGCTGGTCATGCTCTTCACGAATCGGCCAACG ATCCGCGAGGTCATCTTGTTCCCACAGCTTCGCACCAAACCTCAACCGCTGGGGCTCGCCGAAGACTTACAGCCGTACCT CGAACTGGTTCCCGGGTTTCAAGAATCGGTGTCGACCGGCAGCGCGTCACCCGAAGGCGAAGCCGGCTGA Protein sequence : MPLNDQQRARLEKLRELRQQGIDPYPARSHRQLTAAQAHAVFTEREPHLGGQPDPEPVTLAGRVVSVRDMGRTVFSHIRD GSGAIQLFLRREFVGDDQLAWFKRYVDLNDFVEADGHLFRTRTGEVSLEVHALRLLSKALNPPPDKWHGLTDVETRYRQR YVDLMANPDTRQIFVTRARVIRAIRQYLDERGFLEVETPTLQPIYGGAAARPFTTYYHALDQTFYLRISDELYLKRLLVG GYERVYEICKDFRNEGIDARHNPEFTMLEFYAAYADYHDIMQMCEELIVFAAREALGTLTFQWGDTVIDLTPPWARMSLR EALLRFTGIDFLEVTDQPTLYARARALGADVEPTTVWPRILDELLKTFVRPRLVQPTFIYDYPVALSPLAKRKPEDPRLV ERFQLFVGGLELANAYTELNDPLDQLYRFLEQARDRAQGDEEAMPIDEDFINALMYGMPPTGGFGLGIDRLVMLFTNRPT IREVILFPQLRTKPQPLGLAEDLQPYLELVPGFQESVSTGSASPEGEAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-105 | 46 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002522097.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-105 | 46 |
