Gene Information

Name : trd_0224 (trd_0224)
Accession : YP_002521479.1
Strain : Thermomicrobium roseum DSM 5159
Genome accession: NC_011959
Putative virulence/resistance : Virulence
Product : putative ABC superfamily transport protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 236244 - 236945 bp
Length : 702 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGTCGCATCCACCGCTCGTCCGACTCGACTGCATAAGCAAAGTCTACCGAGACGGGCAGCGCGAAATCGTGGCGCTCGA
CCAGGTGACGCTCGACATCACCGCTGGTGAGTGGGTAGCGATCGTCGGGCCATCCGGCTGCGGCAAATCGACTCTTCTCA
ACCTGATCGCGGGCATCGATCGACCGACCAGCGGTCGCGTGATCATCGCTGGCACCGATCTCGCCCAGCTCGACGAGGAG
GCACTCGCTCGCTGGCGTCGCAGCCACGTCGGAATCGTCTTCCAGTTCTTCCAGCTCCTGCCAACGCTGACCGCCCTCGA
AAATGTTCAACTTCCACTCGTCTTGGCAGGTCGCCGGGACGCTCCCCAGCGAGCACGCGAGCTCCTCGAGCGCGTCGGGC
TGGCGTACCGGGCGCACCGCCTTCCCAGCGAACTCTCGGGCGGCGAACAACAGCGGGTCGCGATCGCCCGGGCGCTGGCC
AACGATCCGCCCCTGCTGCTCGCCGATGAGCCGACCGGCAATCTCGATAGCGCGAGCGGCGAGACCGTTCTCGAACTGTT
CCGGACCGCTTGGCACCACGGGACCACGATTCTCCTGGTGACCCATGACCGCGAGGTGGCTGCGCGGGCGCAGCGGATCG
TGGAACTGCGCGATGGGCGTGTCGTTGCCGATTCGGCTAGCCGAGTCAGTCCTGCACGGTAA

Protein sequence : 
MSHPPLVRLDCISKVYRDGQREIVALDQVTLDITAGEWVAIVGPSGCGKSTLLNLIAGIDRPTSGRVIIAGTDLAQLDEE
ALARWRRSHVGIVFQFFQLLPTLTALENVQLPLVLAGRRDAPQRARELLERVGLAYRAHRLPSELSGGEQQRVAIARALA
NDPPLLLADEPTGNLDSASGETVLELFRTAWHHGTTILLVTHDREVAARAQRIVELRDGRVVADSASRVSPAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-29 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-13 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
trd_0224 YP_002521479.1 putative ABC superfamily transport protein NC_012469.1.7686878. Protein 2e-42 49
trd_0224 YP_002521479.1 putative ABC superfamily transport protein NC_008702.1.4606598. Protein 9e-32 49
trd_0224 YP_002521479.1 putative ABC superfamily transport protein CP001581.1.gene798.p Protein 2e-36 45
trd_0224 YP_002521479.1 putative ABC superfamily transport protein NC_012469.1.7686946. Protein 1e-20 44
trd_0224 YP_002521479.1 putative ABC superfamily transport protein NC_012469.1.7685735. Protein 1e-30 43
trd_0224 YP_002521479.1 putative ABC superfamily transport protein CP001581.1.gene598.p Protein 7e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
trd_0224 YP_002521479.1 putative ABC superfamily transport protein VFG2059 Protein 5e-09 44