|
Name : trd_1669 (trd_1669) Accession : YP_002522868.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Unknown Product : transcriptional regulatory protein degU Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2197 EC number : - Position : 1665830 - 1666567 bp Length : 738 bp Strand : + Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08279 DNA sequence : ATGAGCCCGATCAACATCCTCATCGTGGACGATCACCCGCTCTTCCGGAGCGGTATCCGCTGGAGCCTGGAGCAGAACCC CCAGTTCGTCATCGTCGGCGAGGCAGCCGACGGGAGCGAGGCACTGCGCTTGGCCGACGAACTCTCGCCGGACGTCATCC TGGTCGACCTCAGCCTTCCCGGCATGAACGGATTGGAAGTCGCCCGAGCTCTCAAGCGCCGGCAACCGCAGGCTGGCGTG ATCATCCTCACCATGCACCAGGACGACGAGCAACTGTTCAATGCGATCCGAGCCGGAGCCTCGGCCTACTGCACCAAAGA CATCGAGCCCGAACAACTGATCGATGTCATCACCCGTGTCGCGCGCGGCGAATATCTCATCAACGAGATGGTTCTCTCTC GCCCCTTCGTCGCCTCGCGGGTCCTCGATCAGTTCCGCGAACTCTCCCGCCTCGACCGCACATCGAGCGGCTTTTTCTCT CCCTTGACCCCGCGCGAAATCGAGATCCTCGATTGTGTGGCCCGCGGGTACAGTAACAAGGAAATCGCTCAGGCGCTCAA CATCAGCGATCAGACCGTCAAGAACCACATCACGTCGATCCTGCGCAAGTTGGCGGTCAACGACCGTACCCAGGCAGTGA TCTATGCGCTCCGCCACGGCTGGATCAAGCTGGAGGATACCGAGGACAGTCTCCCTGGCCCCGCCCCCAGTTTCGGTCGC GAGCGCGGACGACGCTAG Protein sequence : MSPINILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMNGLEVARALKRRQPQAGV IILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFS PLTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWIKLEDTEDSLPGPAPSFGR ERGRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| narP | YP_217238.1 | transcriptional regulator NarP | Not tested | SPI-12 | Protein | 2e-34 | 44 |
