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Name : trd_1280 (trd_1280) Accession : YP_002522487.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Resistance Product : inner membrane ABC transporter permease YddQ Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1173 EC number : - Position : 1271308 - 1272216 bp Length : 909 bp Strand : + Note : identified by match to protein family HMM PF00528 DNA sequence : ATGGAGCGAACCACGACCGCGACGACCAGGCCAGTGACCGTGCTGCTCGAGCGCCCACCGCGCCAGCGCACCCTCTCGAG CACGGTCATCGAATTCCTTCGTCACAGCCCGCTCAACTTGCTGGGCGTGGTACTGATCGCCCTTTTCCTTTTCCTCGTGG TCTTCGGTAGTGTGCTCGCACCGCACGACCCCATCCAGCCGAACGTCGCCCTCAAGCTTCAGCCCCCATCGTCGACGTAC TGGTTCGGTACCGACGAGCTCGGGCGCGACGTGTTCAGTCGGGTGCTGAGCGGAGCCAAATATTCCTTGGGTATCGCGTT CATCATTCTGTCGATCGCTGTCGTTGTCGGAACGCTGGTCGGTCTGATCGCTGGCTACGTCGGTGGGCTGGTCGACGAAC TGCTCATGCGCCTGACCGACCTTTTCCTGGCTTTTCCGGCCCTCGTTCTCGCCATGGCGATCGCTGCGACGCTCGGTCGT AACCTGCAGAACACGGTGATCGCGCTCACCGTCGTGTACTGGCCATGGTATGCACGCCTCGTTCGGGGTCAGGTGCTGTG GCTCAAGGAGCGCGAGTTCATCGAGGCAGCGCGAGCGATCGGTGCCTCGCCCTGGCGCATCGTCGGCCGGCATATTCTGC CGAACACGCTTGCGGTGATCATCGTCCAACTCACGCTCGATGTGGGCTATGCGGTGTTGGCAACGTCCGGCCTCTCGTTT CTCGGACTCGGTGCCCAGCCTCCGACGCCGGAATGGGGTACGATGATCGCTGGTGCCCGAACCTTCTTCCGCGATGCGTG GTGGTACATTACGTTTCCTGGCCTGGCCCTGACGCTCACCGTTTTGGGCTTCAATCTACTCGGCGATGGCTTGCGTGACT TCCTCGATCCGCGGACTCGGCGACGGTAA Protein sequence : MERTTTATTRPVTVLLERPPRQRTLSSTVIEFLRHSPLNLLGVVLIALFLFLVVFGSVLAPHDPIQPNVALKLQPPSSTY WFGTDELGRDVFSRVLSGAKYSLGIAFIILSIAVVVGTLVGLIAGYVGGLVDELLMRLTDLFLAFPALVLAMAIAATLGR NLQNTVIALTVVYWPWYARLVRGQVLWLKEREFIEAARAIGASPWRIVGRHILPNTLAVIIVQLTLDVGYAVLATSGLSF LGLGAQPPTPEWGTMIAGARTFFRDAWWYITFPGLALTLTVLGFNLLGDGLRDFLDPRTRRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppC | YP_005160016.1 | putative peptide transport system membrane protein | Not tested | Not named | Protein | 2e-36 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| trd_1280 | YP_002522487.1 | inner membrane ABC transporter permease YddQ | BAC0272 | Protein | 7e-41 | 41 |
