|
Name : mutS (trd_1109) Accession : YP_002522319.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1088704 - 1091358 bp Length : 2655 bp Strand : - Note : identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 DNA sequence : ATGGTGATCGCCGTGCCGAGTAGGCAGTGGGCGATCAGCGTCCGTACACTATCGTCAGGGGTGGCTGTGTCGACACCGAT CCGCAAGCAGTATCTGGAGATCAAGCGACAGGTTCCCGATGCTCTGCTCTTGTTCCGGTTGGGCGATTTTTACGAACTCT TCGACGACGATGCGGAAGTCGCCAGCCGGATTCTCGATATCGCCTTGACGTCGCGGGATCTCGGCAAGGGACAGCGGGTG CCGATGGCTGGCATCCCGGCCCATGCTGCCGAGCCGTACATCGCCAAGTTGGTCGCTGCCGGTTACCGGGTCGCGCTCTG CGACCAGATCGGTACACCGGACGGTCGTAACCTGGTCGAGCGTCGCATCACCCGGATCCTCACCAGGGGAACCATCACCG AGCCGGCCATGCTCGACGCGCGGCGCAATACGTACATCGCCGCTGTCCTGCTCGAGTCGTCACGGGCCGGCCTGGCGTAT GCGGATCTTTCCACGGGAGAGTTCGCCGCGACCGAGTGGGTTGCGGAACAGCTCGAGGAACTCCGTGCAGCGGTGGAACG GGAACTCTTGCGGATCGCACCGGCTGAACTCGTGCTCCCGGCAGGTCGTCGCGGGGTGATCGGCGTCGAGGGAGCTGCCG TCACCGAGCTGGAGGAGCGCGCCTGGCGCGAGCACGAGGCACGTCGCGTCCTGCACGAGCACTTCGGTGTTGAAACGCTC GCGAGCTTCGGGCTCGCGGACCGCCCGGCGGCGCTGCGGGCAGCGGGCGCGCTCCTCGGGTATCTTCTGGACACGCAGGT GGGGCAGCTACCCCAGCTCGACGATCTCGTCGTGTACCAGACCGATTCGTTCATGACGCTCGACGCGGTGACGCGACGCA ACCTCGAGCTGCTCGAGTCGGCACGCGGGGAGCGCGCTCATTCACTGGTGTCGGTTCTCGATCGGACGGAAACACCGATG GGTGCGCGCTTGCTCCGGCGCTGGCTCAGCCAGCCGCTCCTCGATGTGGGCGCGATTCGGCAGCGGCAGGAGCGCGTGGC GGCGCTCGTCGAGGAGACGCTCGTCCGTGCCCGGCTGGGTATCCTCCTGGCCGGCGTCGCCGACCTGGAACGGTTGGCCA ATCGTGTCTTGACCGGGCATGTGACACCTCGTGAATTACGCCAACTCGGTCACTCGCTCGCTCGCTTGCCCGAAATCGCC GAGATAGCGGGCCGACGACCAGAACTTGCACCCCTCTCCGCTCTGCCGGACCTCCTGCCGGCGGCTCGTCTCATCGAGTC AGCGATCGTCGAGGATCCGCCCCCGAGTCTCGGCCAGGGGCATGTGATCCGTGCCGGGTTTGCGCCGGAGCTGGACGAGC TGCGGGAACGGGCACGTTCGGCGCGCGAGTGGATCGCCTCGTTGGAGCAGCGCGAGCGGGAGCGCACCGGTATCCGATCC CTGAAGGTGGGCTACAACAAAGTTTTTGGCTACTACATCGAGGTGAGCCATGCCAATCGGCATCTCGTGCCGCCCGATTA CCAGCGTAAGCAGACATTGGTCGGGGCTGAGCGCTACGTAACGCCGGAACTCCGCGAGTTCGAGAGCATGGTCTTGCAGG CGGAGGAACGAATCGCGGCACTCGAGGAGGAGGTCTACCGGCGCGTCGTCAAAGAATTGGCGAGCTGCGCTGCACAGATC CGGCGAGCAGCTCAGCTCGTGGCTGAATTGGATGTCTACCGTGCGCTCGCTGAGGTGGCAGTGGACCGGCGGTACGTCCG CCCGGTTGTCGACGAGAGTACGGTTTTGGAAATCAGGGGTGGGCGCCATCCCGTCGTGGAGACGACGCTGGAAGCGGGCC GATTCGTCTCCAACGACGCCCGGCTCGATACCGAGAGCGATCAGATCGTGATTCTCACCGGTCCCAACATGGCAGGAAAA TCGACCTTTCTCCGTCAAGTCGCACTGATCGTGCTCTTGGCGCAGGTCGGTTCTTTCGTGCCAGCCGAGTTCGCTCGGAT CGGGCTGGTGGATCGCATTTTCACCCGCATCGGTGCCCAGGACGACATCGCGGCCGGTCAGAGTACCTTCATGGTGGAAA TGGTCGAGACGGCATCGATTCTGCGCCAAGCGACGCTCCGCTCGCTCGTTGTTTTGGACGAGGTCGGTCGGGGAACGAGC ACGTACGACGGTTTGGCGATCGCTCGTGCAGTGGTGGAGTACTTGCACAACCATCCACGACTCGGCTGCCGAACGCTCTT CGCGACCCACTACCACGAGTTGACGGAACTGGAGCGTGTCTTACCACGAGTCCGTAACTACCGCATGGACGTGTTGGAAG AAGGTGATCGCGTCGTCTTTCTCCACCGAGTCGTGCGGGGTGGAGCGGACAAGAGCTATGGGATCCATGTGGCCCAGCTC GCTGGCCTGCCGCACGCGGTGGTTCGTCGGGCACGGGAGATCCTGCAGGAGCTCGAATCAGCACGCAGCGGTGAGCACAC GCGGCGGCGCCAGAGCATGGCCAAGGAGGTACCGCTGACGATCCAGCTCACGCTCTTCAGCCCGCCTCATCCTGTCTTGG AACGACTGCGCTCGCTGGAACTCGACGGGATGACGCCGCTCGAGGCGCTGACGACACTCTACGAGTTACAGCGGTTAGCG CAGGAAGCCGAGTGA Protein sequence : MVIAVPSRQWAISVRTLSSGVAVSTPIRKQYLEIKRQVPDALLLFRLGDFYELFDDDAEVASRILDIALTSRDLGKGQRV PMAGIPAHAAEPYIAKLVAAGYRVALCDQIGTPDGRNLVERRITRILTRGTITEPAMLDARRNTYIAAVLLESSRAGLAY ADLSTGEFAATEWVAEQLEELRAAVERELLRIAPAELVLPAGRRGVIGVEGAAVTELEERAWREHEARRVLHEHFGVETL ASFGLADRPAALRAAGALLGYLLDTQVGQLPQLDDLVVYQTDSFMTLDAVTRRNLELLESARGERAHSLVSVLDRTETPM GARLLRRWLSQPLLDVGAIRQRQERVAALVEETLVRARLGILLAGVADLERLANRVLTGHVTPRELRQLGHSLARLPEIA EIAGRRPELAPLSALPDLLPAARLIESAIVEDPPPSLGQGHVIRAGFAPELDELRERARSAREWIASLEQRERERTGIRS LKVGYNKVFGYYIEVSHANRHLVPPDYQRKQTLVGAERYVTPELREFESMVLQAEERIAALEEEVYRRVVKELASCAAQI RRAAQLVAELDVYRALAEVAVDRRYVRPVVDESTVLEIRGGRHPVVETTLEAGRFVSNDARLDTESDQIVILTGPNMAGK STFLRQVALIVLLAQVGSFVPAEFARIGLVDRIFTRIGAQDDIAAGQSTFMVEMVETASILRQATLRSLVVLDEVGRGTS TYDGLAIARAVVEYLHNHPRLGCRTLFATHYHELTELERVLPRVRNYRMDVLEEGDRVVFLHRVVRGGADKSYGIHVAQL AGLPHAVVRRAREILQELESARSGEHTRRRQSMAKEVPLTIQLTLFSPPHPVLERLRSLELDGMTPLEALTTLYELQRLA QEAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 6e-124 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| mutS | YP_002522319.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 2e-130 | 42 |
