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Name : trd_1035 (trd_1035) Accession : YP_002522245.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Virulence Product : ClpC ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1001854 - 1004307 bp Length : 2454 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGGCGGACAAGTTCGAGAAGTTCACGGAACGAGCCCGGAAAGTGCTCGCGCTGGCCCAAGAGGAAGCGCGACGCTTCAA TCACAACTACATCGGCACCGAGCACCTGCTCCTCGGTCTCGTGCGCGAGGGGGAAGGTGTGGCGGCACGCGTGCTCCAGA GCATGGGCGTGCAGCTGCCCAAGGTGCGTAGTGCCGTCGAGTTCATCATCGGGCGAGGGGAAAGCACGGTCGTCGGTGAG ATCGGGCTGACCCCGCGCGCTCGCAAGGTGATCGAGTATGCCGTGGATGAAGCGCGCCGACTCGGGCACCACTACATCGG AACGGAGCATCTGTTGCTCGGGCTCGTTCGCGAGGGTGAGGGTATCGCTGCGGGCGTGCTGGAGAGCCTCGGCGTGAACC TGGAAAAGGTTCGCCAGCAGGTCCTACAGGTGCTCGCCCAAGGGACCGCCTACCAGCAGCGTGCGCAGCAGACCAAGACG CCGTACCTCGATGCGCTCGGGTTCGACCTCACCGAGGCAGCTCGGCTCGGGAAGCTCGATCCAGTCATCGGTCGGCACAA CGAAATCGAACGAGTGATGCAGATCCTCTCGCGCCGGACGAAGAACAACCCAGCCTTGATCGGTGAGCCAGGGGTCGGTA AGACCGCGATCGTGGAGGGGCTGGCGCAGCGGATCGTTGCCGGTGACGTGCCGGAGCCACTGCAGGGCAAGCGCCTGGTC GCCCTGGATATCGGTGCCTTGGTCGCTGGAACCAAGTATCGAGGCGAGTTCGAAGAGCGGCTGAAGAAGATCGTCGCGGA GGTCAAGGAGTCTGGGACGATCCTGTTCATCGACGAACTCCACACGTTGGTCGGTGCCGGGGCGGCCGAGGGAGCAGTCG ATGCGGCGAACATCTTGAAGCCCGCCTTGTCGCGCGGTGAGGTGCAAACGATCGGTGCCACGACGCTCGACGAGTATCGG AAGTACATCGAGCGAGATGCAGCATTGGAGCGGCGATTCCAACCCGTCATCGTGAACGAGCCGACTGTCGAGGAAACGAT CGAGATCCTGAAGGGGATCCGTGAGCGGTACGAGGAGCATCACAAGCTCAAGATTTCGGATGAGGCGCTTCACGCGGCCG CTGTGTTGGCAGCACGTTACGTGACCGATCGGTTCTTGCCTGACAAGGCGATCGACCTGGTCGATGAGGCTGCATCGCGT GTCCGGATGTACCGTTCTGCCTCACCACCGTCGCTCAAGGAGGCTCGTCGCGGGCTGGAGTCGCTGCGGCGCGAACTGGA TGCCGCGGTGGCCAGCCAGGAGTTCGAGTTGGCTGCCGAGTTGCGCGAGCGCGAGCGACAGTTGGTGCATCGTATCCACG AGCTGGAGCAGCATTGGCGCGAAGAACAAGGCCAGGAAGAGCCGATCGTCACGGAAGAGGATATTGCCCAGGTCGTCTCG ATGTGGACGGGTATTCCGCTCACCCGTTTGCACACCGAGGAAAGCGAGCGCCTACTCCATATGGAGGAAGCGCTGCATGA GCGTGTGATCGGGCAGGACGAAGCGATTTCGACGCTCGCTCGTGCTGTGCGCCGTGCTCGTGCGGGACTCAAGGACCCGC GTCGACCGATCGGGACCTTCATCTTCCTCGGACCGACGGGAGTGGGGAAGACGCTGTTGGCGCGTGCGCTCGCTGAGTTC ATGTTCGGTAGTGAGGATGCGCTGATCAAGATCGACATGAGCGAATTCATGGAGCGGCACACGGTGTCGCGTCTGGTGGG GGCGCCGCCCGGCTACATCGGGTACGAGGAAGGTGGACAGCTGACGGAAGCCGTGCGCCGCAAGCCGTACTCGGTGATCC TGCTCGACGAGATCGAGAAAGCGCATCCGGAAGCGTTCAACATCCTCCTCCAGATCATGGAGGATGGGAACCTGACGGAT GCGAAAGGCCGGCGTGTCGACTTCCGGAACACCATCTTGATCATGACGTCGAACATCGGGGCGGAACTGATCCAGCGCGA AGGTAGCCTCGGCTTTGCAGTGGCTGACGATCCGACCAAGAAGATGCAAGCTGATTACACTGCGATGAAGGACAAAGTCC TCTCGCAGCTCAAGCAGACCTTCCGGCCGGAGTTCCTGAACCGAATCGATGCGGTCATCGTCTTCCATCCGCTGACGCCA GAACACGTCCGACAGATCGTCGATCTGGAACTCAAGCGGATCCGCAAGCAGCTGGCGGAGCAACAGATCGGTCTCGAAGT CACCGATGCGGCGAAGGATCTTTTGGCGAAGCGCGGCTACGACCGGCAGTTCGGAGCCCGTCCATTGCGGCGGATCATCC AGAACTTGATCGAGGATCCGTTGGCGGAAGCGATCCTCGCTGGTCGGTTCAAGCCGGGGAGCACGGTCGTCATCAATGTC CGCGACGACTTGCTCACCATCGAACCGGCAGAGGCACTGAGCACAGTCTCTTAA Protein sequence : MADKFEKFTERARKVLALAQEEARRFNHNYIGTEHLLLGLVREGEGVAARVLQSMGVQLPKVRSAVEFIIGRGESTVVGE IGLTPRARKVIEYAVDEARRLGHHYIGTEHLLLGLVREGEGIAAGVLESLGVNLEKVRQQVLQVLAQGTAYQQRAQQTKT PYLDALGFDLTEAARLGKLDPVIGRHNEIERVMQILSRRTKNNPALIGEPGVGKTAIVEGLAQRIVAGDVPEPLQGKRLV ALDIGALVAGTKYRGEFEERLKKIVAEVKESGTILFIDELHTLVGAGAAEGAVDAANILKPALSRGEVQTIGATTLDEYR KYIERDAALERRFQPVIVNEPTVEETIEILKGIRERYEEHHKLKISDEALHAAAVLAARYVTDRFLPDKAIDLVDEAASR VRMYRSASPPSLKEARRGLESLRRELDAAVASQEFELAAELRERERQLVHRIHELEQHWREEQGQEEPIVTEEDIAQVVS MWTGIPLTRLHTEESERLLHMEEALHERVIGQDEAISTLARAVRRARAGLKDPRRPIGTFIFLGPTGVGKTLLARALAEF MFGSEDALIKIDMSEFMERHTVSRLVGAPPGYIGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEAFNILLQIMEDGNLTD AKGRRVDFRNTILIMTSNIGAELIQREGSLGFAVADDPTKKMQADYTAMKDKVLSQLKQTFRPEFLNRIDAVIVFHPLTP EHVRQIVDLELKRIRKQLAEQQIGLEVTDAAKDLLAKRGYDRQFGARPLRRIIQNLIEDPLAEAILAGRFKPGSTVVINV RDDLLTIEPAEALSTVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| trd_1035 | YP_002522245.1 | ClpC ATPase | VFG0079 | Protein | 0.0 | 61 |
| trd_1035 | YP_002522245.1 | ClpC ATPase | VFG0080 | Protein | 8e-136 | 51 |
