Gene Information

Name : RSKD131_3836 (RSKD131_3836)
Accession : YP_002520769.1
Strain :
Genome accession: NC_011958
Putative virulence/resistance : Unknown
Product : Integrase, catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 770861 - 771769 bp
Length : 909 bp
Strand : -
Note : -

DNA sequence : 
GTGATGGTCAGGTTCATCGACGACCATCGAGGTGAACACGGGGTCGAGCCGATCTGCGGCGTGCTGCTGATCGCTCCGTC
CACCTACTATTGTCATCTGGCGAAGCGGGCCGATCCGTCCCGGCTGTCGGATCGGGCACGTCAGGACGAAGCGCTGCGCC
CCGAGATCCTTCGCGTGTTCGAGGAGAACTGGCGGGTCTATGGCGTCCGGAAGGTCTGGCGACAGCTTGGTCGGGAAGGC
TTCGATGTCGCGCGATGCACGGTGGCACGGCTGATGAAGAGCATGGGTATTCAAGGCATTGTCCGCGGCAAACCGCACCG
CACGACGATCCCCGACAAGAAGGCGCCGTGCCCGCTGGACAAGGTGAACCGCCAGTTCCGCGTGTCTGCACCGAACATGC
TCTGGGTCAGCGATTTCACCTATGTCGCCACCTGGAAAGGGTTCGTCTATGTCGCCTTCGTCATCGACGCCTATGCACGC
CGCATCCTGGGCTGGCGCGTCAGCACCTCGGCCAAAGCGGGTTTCGTTCTCGATGCCCTCGAACAGGCAGTCCATGAACG
CCGCCCGGCGAAGGGTATGGGACTGGTTCACCACAGCGACCGCGGCTGCCAGTATCTGTCCATACGCTACACCGAACGCT
TGGCCGAAGCAGGCATCGAACCCTCGGTCGGCAGCGTCGGCGACAGTTATGACAATGCTCTGGCCGAGACGATCAACGGG
CTCTTCAAGGCCGAGGTCATCCACCGTCGGGGTCCATGGCGCAGCTTTGAGGCTGTCGAATACGCAACACTCGAATGGGT
TGACTGGTTCAACAACCGCCGCCTGCTGGAGCCCATCGGGAACATCCCGCCCGCCGAAGCCGAGGCGAAATTCTACGCTG
CTCTGGACGCTGAACCCATGGCCGCATAA

Protein sequence : 
MMVRFIDDHRGEHGVEPICGVLLIAPSTYYCHLAKRADPSRLSDRARQDEALRPEILRVFEENWRVYGVRKVWRQLGREG
FDVARCTVARLMKSMGIQGIVRGKPHRTTIPDKKAPCPLDKVNRQFRVSAPNMLWVSDFTYVATWKGFVYVAFVIDAYAR
RILGWRVSTSAKAGFVLDALEQAVHERRPAKGMGLVHHSDRGCQYLSIRYTERLAEAGIEPSVGSVGDSYDNALAETING
LFKAEVIHRRGPWRSFEAVEYATLEWVDWFNNRRLLEPIGNIPPAEAEAKFYAALDAEPMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 9e-71 63
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 6e-61 62
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-60 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 9e-81 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-77 59
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-76 59
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-79 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-80 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-80 59
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-80 59
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-78 59
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-78 59
Z1198 NP_286733.1 transposase Not tested TAI Protein 7e-79 59
Z1638 NP_287141.1 transposase Not tested TAI Protein 7e-79 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-56 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-77 58
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-77 58
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-77 58
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-78 58
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-78 58
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 6e-76 57
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-55 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_3836 YP_002520769.1 Integrase, catalytic region VFG1602 Protein 3e-76 57