Gene Information

Name : RSKD131_3678 (RSKD131_3678)
Accession : YP_002520611.1
Strain :
Genome accession: NC_011958
Putative virulence/resistance : Virulence
Product : Two component transcriptional regulator, winged helix family precursor
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 607762 - 608424 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGCCCTGGTGGTCGAGGATGATGCGCGGATCGCGCAGGATCTGAGCGTCGCGCTCGGCTCGGCCGGCTTCAGGGT
CGAGACGGCCGCAGACGGCGAGACCGCGTGGTTTCTGGGCGGGACAGAGAGCTACGATCTGATCGTGCTCGACCTCGGCC
TGCCGAAGCTAGATGGCCTCGCCGTGCTGAAGCGATGGCGGGCGGAAGGCGTGGAGATCCCGGTGCTGGTGCTGACGGCG
CGGGGCACCTGGACCGAGCGCGTGGAAGGCATCGATGCGGGGGCCGACGACTATCTGCCCAAGCCCTTCCGGATCGAGGA
ACTGGTCGCCCGCGCCCGGGCGCTCGTGCGCCGCTCGACCGGCCGGGCCGCGCCCCTGCAGAGCGTGGGGCGGCTCGCGC
TCGACATGAACCGCATGACCGCGACCCTCGACGGCCTGCCGCTCGGCCTCGCACCGCTGGAGTTCCGCCTGCTGGCCTAT
CTGATGCTGCACCGCGACAGGGTCGTGCCGCCGACCGAGCTTCTCGAACATCTTTACGGCGACAACGATGCCCGCGAGGC
GAATGCCCTCGAAGCGGTGGTGGCGCGACTGCGCCGCAAGGTCGGGCGCGGCGTCATAGGCACGCGGCGCGGCTTCGGCT
ACCAGCTCGAAGCGGGCCCGTGA

Protein sequence : 
MRALVVEDDARIAQDLSVALGSAGFRVETAADGETAWFLGGTESYDLIVLDLGLPKLDGLAVLKRWRAEGVEIPVLVLTA
RGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRRSTGRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAY
LMLHRDRVVPPTELLEHLYGDNDAREANALEAVVARLRRKVGRGVIGTRRGFGYQLEAGP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-23 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor NC_002516.2.879194.p Protein 7e-38 45
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor BAC0487 Protein 9e-31 44
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor CP000647.1.gene1136. Protein 4e-36 41
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor BAC0530 Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor VFG0473 Protein 1e-28 43
RSKD131_3678 YP_002520611.1 Two component transcriptional regulator, winged helix family precursor VFG1390 Protein 2e-22 41