Gene Information

Name : RSKD131_4214 (RSKD131_4214)
Accession : YP_002521147.1
Strain :
Genome accession: NC_011958
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter, DctM subunit precursor
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1177829 - 1179127 bp
Length : 1299 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTCCGGTCTTTCTCACCTTTTCGGCTCTGACCCTCATCACCTGCGGCCTGATGATCGGCGTGGCGGCCGCCCTCGT
CTCGATCATCGGGGGGATGGCGCTGTTCGGCGATCCCTTCGGCGCCCGCGTGCCGATGATGATCAGCCGTTTCGCCATCG
ACCGGATCGACAACTTCCTGCTGCTGGCCGTGCCCTTCTTCATCCTTGCGGGTCGTCTGATGAACACAGGCGGGGTCACG
GTGCGGCTCTTCGATTTCGTCGCGGTGCTGGTGCAGCCGCTGCGAGGCGGGCTTGGCTATGCCAACGTGATGGCAAGCTT
CGTCTTTGCCGGCATGTCGGGATCGGCGACCGCCGACGTCGTGGGCCTCGGATCCATCGAGATGAAGGCCATGCGCTCGA
ACGGCTATCCCGAGGGCTTCAGCGCCGGCGTCACTGCGGCGTCGTCGCTGCTCGGGCCGGTCATCCCGCCGTCCATCGTG
CTCATCGCCTATGCCGTGCAGGCGGAGCAGTCCGTCGCGACGCTGTTCCTCGCCGCCATCGTTCCCGGCATCCTGCTGGC
CGCCTGCTTCATGGTCTGGGTGGCCCTCGAGTCCCGGCGCCTGAAGCTTCCGGCTGGCAGCTGGCCCTCGGGGCGCGAGG
TCAGGATCAAGGCCCTGCATGCGATCCTGCCGCTCCTGACGCCCGGCATCATCCTCGCCGGCATCTACGGCGGGATCTTC
ACCCCGACCGAGGCCGCGGCGGTGGCCGTGCTCTATGCCCTGCTGCTCACCACCTTCGTCTATCGCGAGATGAACTGGAG
GACATTTCTGGCCGAGCTGAAGGGCACCGCGCTCGACACGGCGACCCTGATGTTCATCATCGCGATGACCTCTGCCTTCG
GCGTCATCATGCTGCGCCTGGGCCTGCCTCAGGCCATGGTCGGGATCGTGGTGGGCATCTCCGAGAACCCGACCATCGTC
ATGTTTCTGATGCTGGTGGTGTGGCTGCTCGTCGGCTGCTTCATGGCGCAGACGCCGGCGATCATCATCCTGACCCCGAT
CCTCATGCCCATCGCGGACCGCTTCGGCTTCGACATGATCCACTTCGGCATCGTCATGGCGATGGCGCTGACCATCGGTC
TTCTGACCCCGCCGGTGGGCATGGTGCTCTATGCCCTGCGCAAGGTTGCCGATGTGCCTCTGGCGATCCTGTTCCGGGTG
GTGATGCCCTACATCGTCATCGCCATCCTGTTCATTTCGCTTCTCATTCTCGTTCCCCAGCTGGTGACGGCCCTGCCGTA
TGCCTTCGGGATGCACTGA

Protein sequence : 
MLPVFLTFSALTLITCGLMIGVAAALVSIIGGMALFGDPFGARVPMMISRFAIDRIDNFLLLAVPFFILAGRLMNTGGVT
VRLFDFVAVLVQPLRGGLGYANVMASFVFAGMSGSATADVVGLGSIEMKAMRSNGYPEGFSAGVTAASSLLGPVIPPSIV
LIAYAVQAEQSVATLFLAAIVPGILLAACFMVWVALESRRLKLPAGSWPSGREVRIKALHAILPLLTPGIILAGIYGGIF
TPTEAAAVAVLYALLLTTFVYREMNWRTFLAELKGTALDTATLMFIIAMTSAFGVIMLRLGLPQAMVGIVVGISENPTIV
MFLMLVVWLLVGCFMAQTPAIIILTPILMPIADRFGFDMIHFGIVMAMALTIGLLTPPVGMVLYALRKVADVPLAILFRV
VMPYIVIAILFISLLILVPQLVTALPYAFGMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 7e-54 43
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 7e-54 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-54 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_4214 YP_002521147.1 TRAP dicarboxylate transporter, DctM subunit precursor VFG1110 Protein 3e-54 43