Gene Information

Name : RSKD131_4210 (RSKD131_4210)
Accession : YP_002521143.1
Strain :
Genome accession: NC_011958
Putative virulence/resistance : Resistance
Product : Transferase hexapeptide repeat containing protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 1174502 - 1175137 bp
Length : 636 bp
Strand : -
Note : -

DNA sequence :
ATGCAGAACCACTTCGACAGCCCCTTTCGGGGCGTGACCCTCGACAAACAGGTCACGAACCCGAACATCCTCGTCGGGCG
CCACAGCTATTACTCGGGCTATTACCACGGCCACGGTTTCGACGACTGCGCCCGCTATCTCCTGCCGGACGCGGGCGTGG
ATCGGCTTGTGATCGGCAGCTTCTGCTCCATCGGATCGGGGGCCGCCTTCATCATGGCCGGCAATCAGGGCCACCGGGCG
GACTGGATCAGCACCTTCCCCTTCTTCTGGATGCCGGAGGTGCCGGCCTTCGCGGAGGCGAGGAACGGCTATCAACCCGC
GGGAGACACGATCATCGGCAACGATGTCTGGATCGGCTCGGAGGCGGTCATCCTGCCCGGGGTGACGGTCGGCGATGGCG
CGATCGTCGGCACCCGCGCCGTCGTCACGCGCGACGTCCCGCCCTATGCCATCGTCGCAGGCAATCCGGCGCGGGTGATC
CGCCAAAGGTTCGAGGAGGAGGACATCCGGCTCCTCCTCGACATGCGCTGGTGGGACTGGCCGGAGGAGGCGTTGCGCGC
GGCCATGAGCCTGATGACGGCCGGGGATGTGCGGCGGCTTCATGACTATTGGGCGCGCAATATCCGGTCGCGGTGA

Protein sequence :
MQNHFDSPFRGVTLDKQVTNPNILVGRHSYYSGYYHGHGFDDCARYLLPDAGVDRLVIGSFCSIGSGAAFIMAGNQGHRA
DWISTFPFFWMPEVPAFAEARNGYQPAGDTIIGNDVWIGSEAVILPGVTVGDGAIVGTRAVVTRDVPPYAIVAGNPARVI
RQRFEEEDIRLLLDMRWWDWPEEALRAAMSLMTAGDVRRLHDYWARNIRSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 7e-61 64
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 3e-60 64
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 3e-60 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein NC_002516.2.878374.p Protein 5e-59 69
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein AY740681.1.gene5.p01 Protein 2e-60 64
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein AF322577.2.gene4.p01 Protein 2e-60 64
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein AY123251.gene2.p01 Protein 3e-61 64
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein JF268688.1.gene6.p01 Protein 2e-57 59
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein AM180355.1.gene2499. Protein 1e-33 45
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein NC_010410.6000796.p0 Protein 3e-27 44
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein NC_011595.7057349.p0 Protein 3e-27 44
RSKD131_4210 YP_002521143.1 Transferase hexapeptide repeat containing protein CP001581.1.gene990.p Protein 2e-38 43