Gene Information

Name : fliP (CCNA_01002)
Accession : YP_002516375.1
Strain : Caulobacter crescentus NA1000
Genome accession: NC_011916
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1083961 - 1084761 bp
Length : 801 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGATCCGCGACCTCTTCAAATCCGTGATCGGCGCCAAGGCGGAAGACCTGCGCCGCGCCGCGATCATCTCGGTGCTGGC
GGCCATCGCCTGCGCCATCATGCCGGCGGCGGCCATGGCCCAGTCGGCCGTGAACATCAATCTGGGCACGGGCGCTGGCC
TGACCGAACGCGTCGTCCAGCTGGTGGGCCTGATGACGGTGCTGTCCCTGGCCCCGTCGATCGTGATCATGACCACCTCG
TTCGTCCGGATCGTGGTGGTTCTGGGCCTGTTGCGCACCGCCATCGGCGTGCAGCAAAGCCCGCCCAACCCCGTGCTGAT
CAGCCTGGCGCTGTTCCTGACCGCCATCGTCATGGCCCCGACCTTCGAGCGCTCCTACGACGCCGGGATCAAGCCGCTGC
TGGATCAGCAGATGGAGCTGCCCGAGGCGTTCGAGGCCGCCAGCGGGCCGGTCAAGCAGTTCATGCTCAGCCAGGTGGAC
CGCGATGACCTGGCGCTGTTCGTGCGCCTGTCCAAGATCCCGCAGCCGAGAACGGCCGCGGAGACGCCGCTGAGGGTGGT
GACCCCCGCCTTCATGATCTCGGAACTGAAGCGCGCCTTCGAGATCGGCTTCCTGTTGTTCATCCCGTTCCTGGTCATCG
ATCTTGTCGTGGCCAGCGTGCTGATGAGCATGGGTATGATGATGCTGCCGCCGGCCTCGATCAGTCTGCCGTTCAAGCTG
ATCTTCTTCGTGCTAGTGGACGGCTGGAGACTCGTGGCCGGCAGTCTTGTCGAGAGCTTCCAGCGCGGCGCCGGCGGATA
G

Protein sequence : 
MIRDLFKSVIGAKAEDLRRAAIISVLAAIACAIMPAAAMAQSAVNINLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTS
FVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQMELPEAFEAASGPVKQFMLSQVD
RDDLALFVRLSKIPQPRTAAETPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKL
IFFVLVDGWRLVAGSLVESFQRGAGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-31 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-31 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-26 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-26 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-26 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-31 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-52 54
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-51 53
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-53 53
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-50 48
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-35 45
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG0394 Protein 4e-34 43
fliP YP_002516375.1 flagellar biosynthesis protein FliP VFG0188 Protein 7e-33 42