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Name : ureC (Tgr7_3104) Accession : YP_002515160.1 Strain : Thioalkalivibrio sulfidophilus HL-EbGR7 Genome accession: NC_011901 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : - Position : 3252666 - 3254372 bp Length : 1707 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGAGCATCCGCATCTCCCGCGCCGCCTACGCGGACATGTACGGACCCACCACCGGAGACCGGGTCCGGCTGGCCGACAC CGGGCTGATCGTCCGGGTGGAGCAGGACTTCACGATCTACGGCGACGAGGTGAAGTTCGGCGGCGGCAAGGTGATCCGTG ACGGCATGGGCCAGTCCCAGCGCTGGGGCGAGACCGTGGCGGACACGGTCATCACCAATGCGCTCATCATCGACCACTGG GGCATCGTCAAGGCCGACGTGGGCATCAAGGGGGGGCGCATCCAGGGCATCGGCAAGGCCGGCAACCCGGACACCCAGCC GGGCGTCACCATCGTGGTCGGCCCGGGCACCGAGGTCATCGCCGGCGAGGGCATGATCCTCACCGCCGGGGGCATCGACG CCCACATCCACTTCATCTGCCCCCAGCAGATCGAGGAGGCGCTCACCAGCGGCGTGACCACCATGATCGGCGGCGGCACC GGCCCCGCCACCGGCACCAACGCCACCACCTGCACCCCCGGCCCCTGGCACATCCACCGCATGCTCCAGGCCGCCGAGGC CTTCCCCATGAACCTGGGTTTCCTGGGCAAGGGCAACGCCAGCCAGCCGGACCCCCTGTGCGAGCAGCTGGAGGCCGGCG CCATGGGCATGAAGCTGCACGAGGACTGGGGCACTACGCCGGCGGCCATCGACAACTGCCTCAACGTGGCCGAGGTGTTC GACGTGCAGGTGGCCATCCACACGGACACCCTGAACGAATCCGGTTTCGTGGAGGATACGCTCGCCGCCTTCAAGGACCG CACCATCCACACCTACCACACCGAGGGTGCCGGCGGCGGACACGCCCCGGACATCATCCGCGCCTGCGGCCAGCCGAACG TGCTGCCCTCCTCCACCAACCCGACGCGGCCCTACACGGTGAACACCGTGGACGAGCACCTGGACATGCTCATGGTCTGC CACCACCTGGACCCGGCCATCCCCGAGGACGTGGCCTTCGCCGAGTCCCGCATCCGCCGCGAGACCATCGCCGCCGAGGA CATCCTCCACGACCTGGGCGCCTTCTCCATGATCTCCTCGGACTCCCAGGCCATGGGCCGGGTGGGCGAGGTGGTGCTGC GCACCTGGCAGACCGCCCACAAGATGAAGCTCCAGCGCGGCAGCCTGGCCGGCGACGACCGCGAGGCCGACAACCTGCGG GTGCGCCGCTACATCGCCAAGTACACCATCAATCCCGCCATCGCCCACGGCATCGCCCACGAGGTGGGCAGCATCGAGGT GGGCAAGCTGGCGGACCTGGTACTGTGGAAGCCGGCCTTCTTCGGCGTGAAGCCCGCCATGGTCATCAAGGGCGGCATGA TCGCCATGGCGCCCATGGGGGACCCCAACGCCTCCATCCCCACGCCCCAGCCGGTGCACTACCGGCCCATGTTCGGCAAC TTCGGCCTGGCCCTGCCCCGCACGTCCCTCACCTTCATGTGCGCCACCGCCATCGAGCTGGGCGTGCCCGAGCAGCTCGG CCTGCAGCGGCAGGTCGCCGTGAGCCGCAACTGCCGCAACATCGGCAAGAAGGACATGATCCTCAACGACTGGATGCCGC ACATGGAGGTGGACCCGGAGACCTACGTGGTACGCGCGGATGGCGAACTACTCACCTGCGAGCCCCTGAGCGAGGCGCCG CTCGCGCAACGCTACTTCCTGTTCTGA Protein sequence : MSIRISRAAYADMYGPTTGDRVRLADTGLIVRVEQDFTIYGDEVKFGGGKVIRDGMGQSQRWGETVADTVITNALIIDHW GIVKADVGIKGGRIQGIGKAGNPDTQPGVTIVVGPGTEVIAGEGMILTAGGIDAHIHFICPQQIEEALTSGVTTMIGGGT GPATGTNATTCTPGPWHIHRMLQAAEAFPMNLGFLGKGNASQPDPLCEQLEAGAMGMKLHEDWGTTPAAIDNCLNVAEVF DVQVAIHTDTLNESGFVEDTLAAFKDRTIHTYHTEGAGGGHAPDIIRACGQPNVLPSSTNPTRPYTVNTVDEHLDMLMVC HHLDPAIPEDVAFAESRIRRETIAAEDILHDLGAFSMISSDSQAMGRVGEVVLRTWQTAHKMKLQRGSLAGDDREADNLR VRRYIAKYTINPAIAHGIAHEVGSIEVGKLADLVLWKPAFFGVKPAMVIKGGMIAMAPMGDPNASIPTPQPVHYRPMFGN FGLALPRTSLTFMCATAIELGVPEQLGLQRQVAVSRNCRNIGKKDMILNDWMPHMEVDPETYVVRADGELLTCEPLSEAP LAQRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 1e-179 | 71 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 1e-179 | 71 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-160 | 63 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 7e-161 | 63 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 7e-161 | 63 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 7e-161 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_002515160.1 | urease subunit alpha | VFG0270 | Protein | 3e-160 | 65 |
