|
Name : Tgr7_2839 (Tgr7_2839) Accession : YP_002514899.1 Strain : Thioalkalivibrio sulfidophilus HL-EbGR7 Genome accession: NC_011901 Putative virulence/resistance : Unknown Product : DEAD/DEAH box helicase Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 2978635 - 2980905 bp Length : 2271 bp Strand : + Note : SMART: DEAD-like helicases; KEGG: ajs:Ajs_2220 helicase domain-containing protein DNA sequence : ATGTCCCTCGATCTTGAAACTGTTCCCGATACCGCCGTGCAGGGCGACCTGCTGGAAGCGGCGGCTTCTCCACTCACGAT CAGCTTGCAGGACTTCGTATCGGAGTTCGGCGATGAGCTGCTCGACTCTCTCAACCGCGCCAACCCGCCTGTCTACGCCG GACAGGCACGGGCGCATCGCCAGACCATCCTGGCCGGCCTGAAGCGGAAGTTGTTTCCCGCCCAGGCCGAAGTCGTCCAT GCCGTCACCGAGCTGCTGGTCGATCGTGGCGAACGTGCCGCGATCGTCAACGGCGAGATGGGCTGCGGCAAGACGACCGT CGGCATCGCCACGGCCGCCGTGCTCAATGCCGAAGGCTACCGCCGCACCCTGGTGCTCTCGCCACCCCACCTAGTCTACA AGTGGCGGCGCGAAATTCAGGAGACGGTGGCCGGCGCCAAGGTCTGGGTGCTCAACGGCCCGGACACGCTGGTCAAGCTG CTGAAACTGCGCGAGCAGTTGGGCGTACCACCCCAGGGGCAGGAGTTCTTCGTCCTCGGCCGTGTGCGCATGCGCATGGG CTTTCACTGGAAGCCGGTGTTCGTGCGTTGGCGTACCCGTCACGGCGACGTGGGGGCGTGCCCGCATTGCGGCCATGTCA TCACCGACCTGGACGGCGAGCCGATCAACCCGGTGGAACTCGAAGCGGAGGAAACCCGCCGCAAGTGCGGACACTGCGCC TCGGCGCTGTGGACGCTGATCCGTCCCCGGCGCCTGTCGGTCAACGACCAGTCGCAAGCCGTGCTCAAGGCGCTCAAGCG TATTCCCACCATCGGCGAAGTCACGGCACAGAAGCTGATGAAGAAGTTCGGCGAGTCGTTCCTGGCTTCGATGCTGGGCG ACAACCTGTACGAGTTCATCAATCTCATGGACGACAACGGCGAGCTGGTGTTTTCCGACCGGCAGGCCCAGCGCATGGAA CGTGCGATGGCCTCGATGGAGTTCGGCTTCGGCGAAGGTGGCTATCAGCCTTCGGAATACGTCAAACGCTACCTGCCGCA AGGCACGTTCGACCTGCTCATCGCCGACGAGGCGCACGAGTACAAGAACGCGGGTTCCGCCCAAGGGCAGGCGATGGGGG TCTTGGCCTCCAAGTCACGCAAGACGCTGCTGCTGACCGGCACCTTGATGGGCGGCTACGGCGACGACCTGTTCTACCTG CTGTTCCGCGCCCTGCCTGGGCGAATGATCGAAGACGGCTACCGGCCGAGCAAGCAAGGCAGTCTGACGCCGGCCGCGAT GGCGTTCATGCGCGATCACGGCGTGCTCAAAGACATCTACTCCGAGAGCAACGGCTCGGCCCACAAGACCGCCAAGGGCA GCAAGATCACGGTGCGAACCGTGAAGGCCCCCGGCTTCGGTCCCAAGGGCGTGCTGCGCTGCGTATTGCCGTTCACGGTC TTCCTCAAGTTGAAGGACATCGGTGGCAACGTGCTGCCGCCCTACGACGAGGAGTTCCGCGAAGTGGCGATGGACGCGGA GCAGGCGCAGGCCTATGGACGCCTGGCGGGGCAACTGACCGCCGAGCTGAAGCAGGCGCTGGCGCGCCGCGACACGACGC TGCTGGGTGTGGTCCTCAACGTGCTGCTGGCCTGGCCGGACACGTGCTTTCGGTCCGAGACGGTCAAGCATCCGCGCACC CGCAACCTGCTGGCGTTCACGCCGTCGCTGTTCACCGATCTGGAGGTCATGCCGAAGGAGCGGGAGCTGATCGATATCTG CCGCGAGGAAAAAGCGGCGGGACGCAAGGTGCTGGTCTACAGCGTCTATACCGGCACGCGCGACACCACATCGCGCTTGA AGGTGCTGCTGGAGCAGGAAGGCTTCAAGGTGGCGGTACTGCGCGCGAGCGTGGATGCCTCCCGCCGGGAAGACTGGATC GCCGAGCAGTTGGATCGCGGCATCGACGTGCTCATCACCAACCCCGAACTGGTGAAAACCGGCCTGGACCTGTTGGAGTT TCCGACCATCGTGTTCATGCAGTCGGGCTACAACGTGTACTCGCTGCAGCAGGCCGCGCGCCGTTCCTGGCGTATCGGGC AGAAGCAGCCGGTCCGGGTGATCTACCTCGGCTACGCGGCCACCTCGCAGATGACTTGCCTGGGGCTGATGGCCAAGAAG ATCACGGTGTCGCAGAGCACGTCGGGAGACGTGCCGGAATCAGGGTTGGACGTTCTCAATCAGGACGGCGACTCGGTGGA AGTGGCACTGGCACGGCAGTTGGTACATTGA Protein sequence : MSLDLETVPDTAVQGDLLEAAASPLTISLQDFVSEFGDELLDSLNRANPPVYAGQARAHRQTILAGLKRKLFPAQAEVVH AVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKL LKLREQLGVPPQGQEFFVLGRVRMRMGFHWKPVFVRWRTRHGDVGACPHCGHVITDLDGEPINPVELEAEETRRKCGHCA SALWTLIRPRRLSVNDQSQAVLKALKRIPTIGEVTAQKLMKKFGESFLASMLGDNLYEFINLMDDNGELVFSDRQAQRME RAMASMEFGFGEGGYQPSEYVKRYLPQGTFDLLIADEAHEYKNAGSAQGQAMGVLASKSRKTLLLTGTLMGGYGDDLFYL LFRALPGRMIEDGYRPSKQGSLTPAAMAFMRDHGVLKDIYSESNGSAHKTAKGSKITVRTVKAPGFGPKGVLRCVLPFTV FLKLKDIGGNVLPPYDEEFREVAMDAEQAQAYGRLAGQLTAELKQALARRDTTLLGVVLNVLLAWPDTCFRSETVKHPRT RNLLAFTPSLFTDLEVMPKERELIDICREEKAAGRKVLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRREDWI AEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYAATSQMTCLGLMAKK ITVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 89 |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 88 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 71 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 71 |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 70 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 7e-179 | 50 |
