Gene Information

Name : Tgr7_2618 (Tgr7_2618)
Accession : YP_002514680.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2760863 - 2762224 bp
Length : 1362 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pap:PSPA7_5187 two-component response regulator PilR

DNA sequence : 
ATGAGCATCCAGCACGTACTCATCGTCGACGACGAGCCCGACATCCGCGAACTCCTGGAGATCACCCTGGGGCGCATGAA
GCTCAGCACCCACGCCGCGGGCAGCGTCACCGAGGCCCGGGCGCTGCTCTCCAGGCATGACTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCAACGGCATTGAGCTGGTGGAACACATCCAGCGACACTGCCCCTGCCTGCCGGTGGCGGTG
ATCACCGCCTACGGCAGCATGGACACCGCCGTGGCGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCTCCAAGCCCGTGGA
CCTGTCCATGCTGCGGGACCTGATCAACACCGCCCTGCGGCTCTCGGAGAAGGACAAGGCGCGGGAGAGCAGCGAGGATC
ATGACGACGGCTCCCAGCTACTGGGCCAGGCGCCGGCCATGCGCAAGCTCAAGGAGACCATCGCCAAGCTCGCCCGCAGC
CAGGCGCCGGTGTGCATCCTGGGCGAGTCGGGCAGCGGCAAGGAGCGGGTGGCCCGGGAGATCCACCGCCTGGGTCCGCG
GGCGGAGCGGCCGTTCGTGCCGGTGAACTGCGGCGCCATCCCCACGGAGCTCATGGAGAGCGAGTTCTTCGGCCACGTGA
AGGGCGCCTTCACCGGCGCGACCGGAGACCATCCCGGCCTGTTCCAGTCCGCCCAGGGCGGCACCCTGTTCCTGGACGAG
GTGGCGGAACTGCCCCTGCACATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGCGGGCGGTCAAGCCCGTGGGCGGCAG
CCGCGAGATCCCCGTGGACGTGCGCATCCTCTCCGCCACCCACCGGGACCTGGCCGCCCTGGTGCGCGAGGGCCAGTTCC
GCCAGGACCTCTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCTGGAGGACCTGCCGCTG
CTGTCGCGCCGCATCCTCGCGCGCATCGCCCAGGACTGGGGCACCCAGCCGCCGCAGCTCTCCGAGGACGCCCTGGCCGC
GCTGCGCGCCTATCCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAGCGGGCCGCGACCCTGTGCGAGGGCG
ATATCCTGGAGGCCGCCGACCTGCACCTGCCCGAAGCGGGCGCGCCCCTGGGCATCACCGCCCGAACCGGCGCCGACGGC
CTGCCCCTGGACGACGTGCTGGAAGACCAGGAACGCCAGGCCATCCTCGCCGCCCTCGCCAAGACCTCCGGCAACCGCAC
CGCCGCCGCCAGGCTCCTCGGCATCAGCTTCCGCCAGCTGCGCTACCGGCTGAAGAAGCTGGATATCGATGTGCCGGGGT
GA

Protein sequence : 
MSIQHVLIVDDEPDIRELLEITLGRMKLSTHAAGSVTEARALLSRHDFDLCLTDMRLPDGNGIELVEHIQRHCPCLPVAV
ITAYGSMDTAVAALKAGAFDFVSKPVDLSMLRDLINTALRLSEKDKARESSEDHDDGSQLLGQAPAMRKLKETIAKLARS
QAPVCILGESGSGKERVAREIHRLGPRAERPFVPVNCGAIPTELMESEFFGHVKGAFTGATGDHPGLFQSAQGGTLFLDE
VAELPLHMQVKLLRAIQERAVKPVGGSREIPVDVRILSATHRDLAALVREGQFRQDLYYRLNVIELRVPPLRERLEDLPL
LSRRILARIAQDWGTQPPQLSEDALAALRAYPFPGNVRELENILERAATLCEGDILEAADLHLPEAGAPLGITARTGADG
LPLDDVLEDQERQAILAALAKTSGNRTAAARLLGISFRQLRYRLKKLDIDVPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-98 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-98 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_2618 YP_002514680.1 Fis family transcriptional regulator BAC0467 Protein 8e-68 44
Tgr7_2618 YP_002514680.1 Fis family transcriptional regulator BAC0089 Protein 3e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_2618 YP_002514680.1 Fis family transcriptional regulator VFG1214 Protein 7e-126 66
Tgr7_2618 YP_002514680.1 Fis family transcriptional regulator VFG0116 Protein 9e-64 43