Gene Information

Name : Tgr7_0022 (Tgr7_0022)
Accession : YP_002512113.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 20438 - 21799 bp
Length : 1362 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: psa:PST_0364 mutant NtrC-like activator

DNA sequence : 
ATGACTGAGGCGAAGGCACGCATCCTGGTGGTGGAGGATGACACCGGCCACCGTGGCCTGCTGCGCGACGAGCTGACGGA
CGCCGGTCACCAGGTCACCGCCGTGGCCGATGCAGAGGCCGCCCTGGCGCAGCTGGATGCGGAGAGCTTGGACCTGGTGC
TGAGCGACCTGCGCCTGCCCGGGGCGAGCGGCCTGGAGTTGCTGGCCCGTTGCCGGCGCATGGCCGCCGCCCCGGGCTTC
ATCATCATCACCGCCTTCGGCACCATCCCCCAGGCGGTGCAGGCCCTGCGGGAAGGGGCGGACGACTTCCTCACCAAGCC
CGTGGACCTGGAGCACCTGGTGCTGGCGGTGGGGCGGGTGTTGCGCCACCGTGCCCTGCAGGCGGAGGTATCCCGTTACC
GGGCGCTGCTGAACGGCGGCGATTTCCACGGCCTGATCGGATCGAGCCCGCCCATGCTGGAACTGTGCGAGGCCATCCGG
CGCATCGCCCGGGCCCCGGGACCGGTGCTGATCACCGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGGGCGGTGCA
CGCCGAAAGCGAGCGCGCCGAAGGGCCCTTCGTGGCCATCAACTGCGCCGGCATCCCCATGGAGCTACTGGAGTCGGAGC
TGTTCGGCCACGTGGCCGGCGCCTTCAGCGGTGCCACCGGCGCCCGCAAGGGCCTGTTCGCCGAGGCGCACGGCGGCAGC
CTGCTGCTGGACGAGATCGGCGAGATGCCCGTGACCATGCAGGCCAAGCTGCTGCGCCTGCTCCAGGACGGACGGGTGCG
CCCGGTGGGCAGCAATCGGGAGCAGCCCGCGGACGTGCGCATCCTGGCCGCCACTCACCGGGACCTGGCATCCCTGATCC
GGGACGGCGATTTCCGCGAGGACCTGTTCTATCGCCTGGAGACCTTCCATCTCGCGGTCCCGCCGCTGCGGGCGCGGGGC
GAGGACGTGGAGCGCCTGTCCCTGGCCTTCCTGCGCCGGGCCGCCGCCGCCCAGGACCGGGCCATCCGCGGCATCACCCC
CGAGGCCCTGCGCGCCCTGCGCCGCTACCCCTACCCGGGCAACGTGCGCGAACTGGCGAGCATCCTGGAACGGGCGGTCA
CCTTCTGCCGGGGCGAGGAGATCACCGAGGCAGACCTGCCCGAACGCGTGCTTGAAGATGCCGCGCGTTCAGCGGGGGCA
GAGGCCCTGTGGGGGGATGCCGAGTCCCTGCCCACCCTGGCCCAGGTGGAGGAGCGCTACATCCGCCACGTGCTGGAGCG
GGTGGGTGGCAACAAGCGCCAGGCGGCCAGGCTGCTGGGTATCGGACGGCGCACCCTCTACCGGCGTCTGGGGGAAGACT
GA

Protein sequence : 
MTEAKARILVVEDDTGHRGLLRDELTDAGHQVTAVADAEAALAQLDAESLDLVLSDLRLPGASGLELLARCRRMAAAPGF
IIITAFGTIPQAVQALREGADDFLTKPVDLEHLVLAVGRVLRHRALQAEVSRYRALLNGGDFHGLIGSSPPMLELCEAIR
RIARAPGPVLITGESGTGKELVARAVHAESERAEGPFVAINCAGIPMELLESELFGHVAGAFSGATGARKGLFAEAHGGS
LLLDEIGEMPVTMQAKLLRLLQDGRVRPVGSNREQPADVRILAATHRDLASLIRDGDFREDLFYRLETFHLAVPPLRARG
EDVERLSLAFLRRAAAAQDRAIRGITPEALRALRRYPYPGNVRELASILERAVTFCRGEEITEADLPERVLEDAARSAGA
EALWGDAESLPTLAQVEERYIRHVLERVGGNKRQAARLLGIGRRTLYRRLGED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-61 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-61 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_0022 YP_002512113.1 Fis family transcriptional regulator BAC0089 Protein 2e-69 44
Tgr7_0022 YP_002512113.1 Fis family transcriptional regulator BAC0467 Protein 2e-70 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_0022 YP_002512113.1 Fis family transcriptional regulator VFG1249 Protein 3e-56 44
Tgr7_0022 YP_002512113.1 Fis family transcriptional regulator VFG1214 Protein 2e-71 42
Tgr7_0022 YP_002512113.1 Fis family transcriptional regulator VFG0116 Protein 6e-56 41