Gene Information

Name : Tgr7_1314 (Tgr7_1314)
Accession : YP_002513386.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 1412934 - 1414907 bp
Length : 1974 bp
Strand : +
Note : PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bpe:BP1631 capsular polysaccharide export protein

DNA sequence : 
ATGCTTGCCGGTCGGGGGGCGGATACGCGATGGCTGGGGTGGGGTGCCAAACCCAGTGCGCGCTGGGCTCAGATCTATGC
CAGGCTCAGCGGTGGAAGGCCTCTTCTGTTGGAAGATGGCTTTTTGCGTTCCTACGGTCTGGGTGTGCATGGTGTGCCCG
CGCTGTCGATCGTTGTCGATGATCTTGGCATTTATTTCGACGCCCGTAAGCCCTCCCGTATCGAACAGCTTCTGCAGGAT
GGTGTTTTCTCGCCTGAGATTCTTCAACAGGCCGAGGCCGCACTTGCGTTGCTGCAGCGCGAGCGCCTGACTAAATACAA
TGTCGGTACTGAGGTGCCGGATGATCACTTCGCCCCGGATGTACGTCGGGTGTTGGTAGTTGATCAGACGTTGGGCGATG
CCTCGATCACCGGCGGGCTCGCCGACGAAGCATCCTTCCTGCGCATGCTGGACGCGGCAGTTGCGGAAAATCCGGGTGCC
GAGGTGTGGGTCAAGACCCATCCTGATGTTCTGGCCGGCAAGCGTGCAAGTTGTCTGTCCGCAGCCCGGGGGCGATCGGA
TGTACGCTGGATCACCCAGGACTGGCACCCGCATTCCCTGCTGGCCCATTTCGAGCGGGTCTATGTGGTCACGTCGCAGA
TGGGGCTGGATGCGCTCATCGTTGGGCGGCCAGTCACCTGTTTCGGGGTGCCTTTCTACAGCGGCTGGGGTCTCACCGAC
GATCGCGTGCCGTGTGAACGTCGCGCCGCCCGGCGCAGTCTGGTGGAACTGATCGCTGCTGCCTATCTGCTGTATGCCAG
ATATCTTGATCCTGAAACAGGTAAACCGGGCAATTTCTTCCAGGTCGCAGACTTTATCGTGCGTCAGCGGCGTGTGCAGG
CACGCTGGCCCCGTCGCTTCGTGGCGGTGGGTTTCCGTGCGTGGAAGGCGGCCCATCTGACTCCGATCCTTGGCATGGCC
CGGGAGGGCGTGCGTTTCGTGCGGGATGCGGAGGCGGCCCGTGCCCTGGGGCTTCGCAAGGATGACGGGCTGATTCACTG
GGGACGGGATGCGCCGCAGCGTGTCGAGGAGCTGGCGCGGGCGACCTCCACGCGCCTGTTCCACCTGGAGGACGGTTTCT
ACCGGTCGGTAGGTCTCGGCTCAGACCTGATCCGCCCCAGATCGGTGGTCATCGATGAACAGGGGCTGTATTTCGATCCG
CGGGGTCCGTCGGACCTCGAGCAGTTGCTCAACACTGCGGCGTTCTCTCCTGATGAACTTGAGCAGGCCCGCTGGGTGCG
GTCGCTGATCGTCGAGCATGGTCTGACCAAGTACAACCTGGAGCCCTTGGTGCCAGTGGACTGGCCTGCGGCAGGTCGTA
CCGTGGTACTGGTGCCGGGGCAGGTGGAGGACGATGCCTCGATCCGTCATGGCTGTGAGTCGGTGCGCACCAATCTGGAC
CTGATGCAGGTGGCCCGTGAGACCTGTCCCGATGCATTCATCGTATTCAAGCCGCATCCGGACGTGGCGTCAGGCAATCG
ACATGGCGCGGTCCAGGATGACGAGGCCTTGCGCCACGTTGACTGGGTCGAGCGAAAGGCCAGCATGGTCTCTTGTCTGG
ATGGTGCAGATGCGGTGCATACCATGACTTCGATGGCCGGGTTCGAGGCGCTGCTGCGCGGCAAGCGGGTGGTGGTGTAC
GGCAGACCCTTCTATGCGGGCTGGGGATTGACGGAGGACAGGCTTTCGATCCCTCGGCGAACGCGCAAGCTTACGCTGGA
TGAGTTGGTCGCAGTCGCTCTATTGCGCTATCCCCTGTATTGGGATTGGGAACTCAAGGGGTTTACGAGCTGCGAGGCAG
TGTTGCGGCGTTTGATTGAGGAACGTGATGCGCTGACTGCAACGGGTGGGCTTGAAAGACTCAGGGCAGGTTGGTTGCGC
CGCCAAGGGCGTAAAATTCGAGCGCTGGTGGCTGGTCTCAGGTCGGGCGCTTGA

Protein sequence : 
MLAGRGADTRWLGWGAKPSARWAQIYARLSGGRPLLLEDGFLRSYGLGVHGVPALSIVVDDLGIYFDARKPSRIEQLLQD
GVFSPEILQQAEAALALLQRERLTKYNVGTEVPDDHFAPDVRRVLVVDQTLGDASITGGLADEASFLRMLDAAVAENPGA
EVWVKTHPDVLAGKRASCLSAARGRSDVRWITQDWHPHSLLAHFERVYVVTSQMGLDALIVGRPVTCFGVPFYSGWGLTD
DRVPCERRAARRSLVELIAAAYLLYARYLDPETGKPGNFFQVADFIVRQRRVQARWPRRFVAVGFRAWKAAHLTPILGMA
REGVRFVRDAEAARALGLRKDDGLIHWGRDAPQRVEELARATSTRLFHLEDGFYRSVGLGSDLIRPRSVVIDEQGLYFDP
RGPSDLEQLLNTAAFSPDELEQARWVRSLIVEHGLTKYNLEPLVPVDWPAAGRTVVLVPGQVEDDASIRHGCESVRTNLD
LMQVARETCPDAFIVFKPHPDVASGNRHGAVQDDEALRHVDWVERKASMVSCLDGADAVHTMTSMAGFEALLRGKRVVVY
GRPFYAGWGLTEDRLSIPRRTRKLTLDELVAVALLRYPLYWDWELKGFTSCEAVLRRLIEERDALTATGGLERLRAGWLR
RQGRKIRALVAGLRSGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 9e-94 47
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 7e-94 47
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 2e-107 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_1314 YP_002513386.1 capsular polysaccharide biosynthesis protein VFG0259 Protein 8e-108 42
Tgr7_1314 YP_002513386.1 capsular polysaccharide biosynthesis protein VFG2568 Protein 4e-73 42
Tgr7_1314 YP_002513386.1 capsular polysaccharide biosynthesis protein VFG0692 Protein 1e-104 41