Gene Information

Name : Tgr7_1307 (Tgr7_1307)
Accession : YP_002513380.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : polysaccharide export protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1596
EC number : -
Position : 1403079 - 1404776 bp
Length : 1698 bp
Strand : -
Note : KEGG: pat:Patl_3241 polysaccharide export protein

DNA sequence :
ATGGCTTGCTCACGCTGCTTCGCAGGATTTTTCTGCTTCCTCCTAATGGTTGCGCTGCCCGCTGCCGCCCTGGCGCAGTC
CATTACGGGCATGGGCGAACTCCCCAGAGAGCAGCAGGCCGAACCGATTCGCGATGTGCTGGAGTCTCCGCCCTCGCTGG
AACGGCGTACGGGAACCTACGGTCCAGTAGACCGCCAGGGACTGCACGCCGATGACATACCTCCCTTTGGCGCTAATCTG
TTCAGGGGTGGCTTCAGGGGCATTCGCAGTTCGGGGATTAACCCGGCCTATCGCATCATGCCCGGGGATCAGATCACCCT
GCGCACCTGGGGGGCGGTTGCCATGGAGCGGGTGCTCCCCGTGGACGCCCAGGGCAACATCTTCATTCCCCAGGTGGGTC
CCGTGCAGGTTCAGGGTACCTCGGCGGCTGAACTGAACGGGCGCGTCGAATCGGCCATCCGGCGGGTCTTCCGTGACAAC
GTTTCCGTGTACACGAACCTGCAGGGGGTGCAGCCCGTCGCGGTGTTCGTCACCGGCTTCGTCAACAGCCCGGGGCTGTA
TGCGGGCGTCCCCAGTGACTCGCTGTTGTATTTTCTCGACCAGGCTTCAGGCATTGATGTCGCCTCCGGCAGCTTTCGGG
ATATCCGCATCCTGCGGGGCGGACGAACCATTGCCACGGTTGATCTCTACCCTTTCCTGCTGAGTGGCGAGATACCCAGG
CCTCAGTTCGAGGAGGGGGATACCCTTGTCGTGGGTCCGCGCGGGCCTATGATCACTGTCACAGGGGATGTGTCACAGCC
CTATCGCTATGAACTGGATGCAGCACCGCGCAGCGGCCAGGATCTGCTGCAATGGGTGCAGACCATCCCCGGTGTTTCCC
ATGCCCTGGTGCGGGGCGTCCGGGAAACAGGTCCCTTCTCCGTCTACCTGCCCATAACCGCCTTTCGCGACGAGTCGCTG
AACGCGGGGGATGAGATCGTCTTTTCCGCAGACCAGCGGGCAGACACCATCGTCGTGGAGCTCGAAGGTATTTACGAGGG
TCCCTCACGCTTCGCCCTGCCCCGGGACGCCCGACTCCTGGATCTGCTGGACAGCATCCCGGTCAATCCGGAACTCGCTG
AAGTCCGCAGCGTGTCCATCAAGCGACTTAGTGTCGCCGAACGCCAGCGTCAGTCCCTGGAGGACAGCCTGAGGCGACTT
GAGACCGCCTATCTGGGTGCCTCGTCCGCGACCGCGGAAGAAGCGGCCATTCGTGCGGCCGAGGCGGAGCTCATCCAGAA
TTTCGTGCAGCGGGCCCGACAGGTCGTACCCACGGGACGCATGGTGGTCGCACATCAGGGCCAGATCAGCAACATCCGGC
TGCAGGATGGCGACATCATCACCATCCCCAGCCAGTCCGATTCGCTGCTGATCAGCGGCGAGGTGCTGGTGCCTCAGGCC
ATGATCTACGTGGCCGGTCAGCGGGCTGAGGACTACATCCGGCGCGCCGGCGGTTTCACGGAACGGGCCGATGAACGCAA
CATCCTGGTGGTAAGGCAGAATGGCGAAGTGGTCTCGGCCAGCGAGGTCGAGCTTCGTCCGGGTGATGAGATCCTGGTAC
TGCCAGTTGTGCCGACCAAGAACCTGCAATTGGCTTCCACCCTGGCGCAGATCATCTATCACATTGCGGTGGCGGCCCGG
GTCGCGCTCAATATCTAG

Protein sequence :
MACSRCFAGFFCFLLMVALPAAALAQSITGMGELPREQQAEPIRDVLESPPSLERRTGTYGPVDRQGLHADDIPPFGANL
FRGGFRGIRSSGINPAYRIMPGDQITLRTWGAVAMERVLPVDAQGNIFIPQVGPVQVQGTSAAELNGRVESAIRRVFRDN
VSVYTNLQGVQPVAVFVTGFVNSPGLYAGVPSDSLLYFLDQASGIDVASGSFRDIRILRGGRTIATVDLYPFLLSGEIPR
PQFEEGDTLVVGPRGPMITVTGDVSQPYRYELDAAPRSGQDLLQWVQTIPGVSHALVRGVRETGPFSVYLPITAFRDESL
NAGDEIVFSADQRADTIVVELEGIYEGPSRFALPRDARLLDLLDSIPVNPELAEVRSVSIKRLSVAERQRQSLEDSLRRL
ETAYLGASSATAEEAAIRAAEAELIQNFVQRARQVVPTGRMVVAHQGQISNIRLQDGDIITIPSQSDSLLISGEVLVPQA
MIYVAGQRAEDYIRRAGGFTERADERNILVVRQNGEVVSASEVELRPGDEILVLPVVPTKNLQLASTLAQIIYHIAVAAR
VALNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsD YP_854331.1 polysialic acid transport protein KpsD precursor Not tested PAI I APEC-O1 Protein 7e-82 42
kpsD CAE85212.1 KpsD protein Virulence PAI V 536 Protein 7e-82 42
kpsD AAZ04468.1 polysialic acid transport protein precursor Virulence PAI I APEC-O1 Protein 5e-82 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_1307 YP_002513380.1 polysaccharide export protein VFG1448 Protein 3e-82 42