Gene Information

Name : Tgr7_1028 (Tgr7_1028)
Accession : YP_002513102.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1114953 - 1116272 bp
Length : 1320 bp
Strand : -
Note : KEGG: mxa:MXAN_5853 sigma-54 dependent DNA-binding response regulator

DNA sequence : 
ATGAAACGCATACACATCGTCGAGGATGAAGAGGTCATCCGCCGCGCCCTGCACCGGCTCCTGGAGCGGGAGGGCTACCA
GGTCAGCGCCAGCGCCACCCTGGGCGAGGCCCGCACCGCCTGCCAGGACGGGGTGGACCTGGTGATCAGCGATCTGCGCC
TGCCCGACGGCGAGGGCACCGCCATGGTGGAGGCCTGCCCGGACACCCCGGTGCTGATCATGACCAGCTATGCCAGCGTG
CGCTCTGCCGTGGAAGCCATGAAGCAGGGCGCCGCGGACTACATCGCCAAGCCCTTCGACCATGACGAGATGCTGCTGTG
CGTGGACCGCATCCTCAAGCAACGCCGCCTGGAACAGGAGAACGCCCGCCTGCGCGAGGACCTGGAGGCGGTCTACCCGG
TCAAGGGCATGGTGGGCCACTCGCCGGCCATGCGCGCCGTGTGCGCCACCGTGGAGAAGGTGGCCCCCACGGACACCACG
GTGCTGATCCGAGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGGGCCCTGCACGACAAGAGCCCCCGGGCCCAGGC
GCCCATCATCGCGGTCAACTGCGCCACCATCCCCGAGGGCCTGGTGGAATCGGAACTGTTCGGCCACGAGAAGGGCGCTT
TCACCGGTGCCGCCCGCGCCCACCGGGGCCTGGTGGAGGCCGCCGACGGCGGCACCCTGTTCCTGGATGAGATCGGCGAG
CTGACCACCGCCGCCCAGTCCCGGCTGCTGCGCGTGCTCCAGGACGGGGAGATCCGCCGGGTGGGCGCCACCGACAGCCG
CCGGGTGGACGTGCGCCTGGTCGCCGCCACCCACCGGGACCTGGAGCAGATGGTGCGCGACGGGCGCTTCCGGGATGACC
TCTACTACCGGCTCAAGGTCATGGAGATCACCCTGCCGCCGCTGCGGGACCGGCGCGAGGACATCCCCATCCTGGCCCGC
TTCCTGCTCGACAAGGCCTGCCAGCGCCTGCGCCGCAGCCCCCCTGGACTCACCGACGAGGCGCTCGCCTCACTGACCCG
TCATGACTGGCCCGGCAACGTGCGCGAACTGGAAAATGCCATCGAGCGGGCCGTGATCCTGGCCGTCGGCCAGGACATCA
CCCCCCAGCACCTGGCACTGACCGGCCAGGACCCGTCCAGCGCCGGGGCCGAACTGAGCCTGGACGCCTATTTCCGCCAG
TTCGTGCTGGACAACCAGGGCCACATGACCGAGACCGAGCTGGCGCGTCGCCTGGGCATCAGCCGCAAGGCCCTGTGGGA
GCGCAGGACGCGCATGGGGATACCCCGCAAGGCGGGGTAA

Protein sequence : 
MKRIHIVEDEEVIRRALHRLLEREGYQVSASATLGEARTACQDGVDLVISDLRLPDGEGTAMVEACPDTPVLIMTSYASV
RSAVEAMKQGAADYIAKPFDHDEMLLCVDRILKQRRLEQENARLREDLEAVYPVKGMVGHSPAMRAVCATVEKVAPTDTT
VLIRGESGTGKELVARALHDKSPRAQAPIIAVNCATIPEGLVESELFGHEKGAFTGAARAHRGLVEAADGGTLFLDEIGE
LTTAAQSRLLRVLQDGEIRRVGATDSRRVDVRLVAATHRDLEQMVRDGRFRDDLYYRLKVMEITLPPLRDRREDIPILAR
FLLDKACQRLRRSPPGLTDEALASLTRHDWPGNVRELENAIERAVILAVGQDITPQHLALTGQDPSSAGAELSLDAYFRQ
FVLDNQGHMTETELARRLGISRKALWERRTRMGIPRKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-66 42
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-66 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_1028 YP_002513102.1 response regulator receiver protein BAC0089 Protein 2e-90 49
Tgr7_1028 YP_002513102.1 response regulator receiver protein BAC0467 Protein 2e-81 45
Tgr7_1028 YP_002513102.1 response regulator receiver protein BAC0022 Protein 2e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_1028 YP_002513102.1 response regulator receiver protein VFG1249 Protein 8e-68 45
Tgr7_1028 YP_002513102.1 response regulator receiver protein VFG1214 Protein 2e-69 41
Tgr7_1028 YP_002513102.1 response regulator receiver protein VFG0116 Protein 1e-63 41