|
Name : Hore_00510 (Hore_00510) Accession : YP_002507807.1 Strain : Halothermothrix orenii H 168 Genome accession: NC_011899 Putative virulence/resistance : Unknown Product : RNA binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 56965 - 59133 bp Length : 2169 bp Strand : + Note : PFAM: S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region DNA sequence : ATGAATCAAAGAATAATTGGACAAATCTCTAAAGAATTAAAACTGAAAACTAACCAGGTAAAAGGAACGGTTAAACTTCT TGATGAAGGTAATACCGTTCCTTTTATTGCGCGTTACCGTAAAGAAGTGACTGGAGGACTTGATGAAGCACAGATAAGGA CTATTGAAGAAAGACTGGAATACCTCCGCAGTCTTCAAAAGCGGAAGGAAGAAGTTATAAGGCTGATTGAAGAGCAGGGA AAGTTAACTCCGGAACTTGAAGAAAAGATTAAAAAAGCTTCCATTTTACAGGAAGTAGAAGATCTCTACAGGCCTTATAA GCAGAAGCGGCGGACCCGGGCTACCAGGGCCAAAGAAAAAGGCCTTGAACCCCTGGCTAAGTTAATGTGGACACAAGAAC TTACTTCTGGTAATCCTGAAGATATAGGTAAGGAATATATCAACCCCGAAGTTGAACTGGAGAGCATTGAAGATGTTTAT CAGGGAGCCAGGGATATTATAGCAGAATGGGTTTCAGATGATGCCGGAATTAGAAAAGAAATCAGGAAAATAACCTTTAA GCAGGGAGTTATTCAGAGCACCTGTAAAGATAGTGAGACCGATGATGAAGGCAAATATGAGATGTATTATGATTACAGGG AACCTGTCAGTAAAATACCACCCCACCGGGTTCTGGCTATTAACCGGGGGGAGAAAGATGAAGTGCTCCAGGTTAAGGTT TTAGCTCCTGAAGAAGATATTATAGAATTAATCAAGGATAGGGTGGTTAACAATCCTGAAAGTATATTTTACAATGATAT AATTGAAGCTATTAAAGATGGATATAAAAGGTTAATTGCTCCTTCCATTGAAAGGGAGGTTAGAAATAGTCTTACTGAAA AAGCAGAAGAGCATGCCATAAATATTTTTTCTAAAAACCTTCGCAATCTGCTTTTGCAGCCACCACTCAGAGGTCATACT GTTATGGGAATTGACCCTGCCTATAGAACGGGTTGTAAAGTCTGTGTTGTGGACCCGACCGGGAGGTTACTGGATACAGC AACTATTTACCCCCATCCGCCCCAGAGCCGGACAGGTGAAGCTAAAAAGGTTGTTAAAGGTTTGATAAATGAATACCAGG TTACTACGATTGCTATCGGGAATGGGACAGCATCCCGGGAAACCGAGTTTATGGTTGCTGATATAATTAAGGAACTTAAA AACACTCAGGTTAACTATGTAATAGTAAATGAAGCCGGGGCTTCAGTTTATTCTGCATCCAAACTGGCCAGAAAAGAGTT TCCTGAACTCGATGTAGCCATGAGAGGAGCCATTTCCATTGCGAGGCGGTTACAGGACCCCCTGGCTGAGCTTGTTAAAA TAGATCCCAAATCCATTGGGGTTGGTCTTTATCAGCATGATGTTAATCAAAAAAACCTTGAAAAATCCCTCGGTAATGTA GTGGAATCGGCCGTTAATTATGTTGGAGTTGATTTAAATACAGCTTCGCCATCCCTTTTAAAATATGTGGCCGGTATTAA TAGCCGGGTGGCGTCAAATATTGTTAAATACCGTGAGGAAAATGGTAAATTTGAAACCAGGGATGAATTATTAAAGGTGA AGGGTCTGGGTAAAAAAACATTTACCCAGGCAGCTGGTTTTTTAAGAATACCGGATGGAACAAATCCCCTGGATAATACC CCAATCCATCCTGAATCCTATCAGGCCGCTAAAGGTCTATTACAGGATGTCGGGTTTAAACTGTTAGATATTACTGATAA GGAAAAGCTTAAGGAAGTGCGTGAAGAGCTGGACTCCATCAATATAAAATCCAGGGCTGAAAAACTGGAGACAGGAATAC CAACTTTAAAAGATATTGTAGATGCTTTAAAAAAACCGGGACGCGACCCGCGTGATGAATTACCTAAACCTATCTTCAGG TCTGATGTATTGAAAATGGAAGATTTAGAGGCTGGCATGCTCCTTCAGGGTACGGTCCGGAATGTAGTGGATTTTGGTGC TTTTGTTGATATTGGGGTCAAGGTGGACGGGCTTGTTCATATTTCTGAAATGAGTCATGATTATGTAGATGATCCCCTCA AGGTGGTACAGGTAGGGGATACTGTAAAGGTTAAAATATTAGAGGTAGATGAGAGGCGAAACAGGATTTCCCTGAGTATG AAGTTGTAG Protein sequence : MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLEYLRSLQKRKEEVIRLIEEQG KLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEKGLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVY QGARDIIAEWVSDDAGIRKEIRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAINIFSKNLRNLLLQPPLRGHT VMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGEAKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELK NTQVNYVIVNEAGASVYSASKLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKTFTQAAGFLRIPDGTNPLDNT PIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSINIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFR SDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM KL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 1e-140 | 46 |
