Gene Information

Name : Hore_05970 (Hore_05970)
Accession : YP_002508349.1
Strain : Halothermothrix orenii H 168
Genome accession: NC_011899
Putative virulence/resistance : Virulence
Product : Tfp pilus assembly protein PilB
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 648991 - 650667 bp
Length : 1677 bp
Strand : +
Note : PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E; type IV-A pilus assembly ATPase PilB

DNA sequence : 
ATGACCAGAACACATATAAAGAAATTAGGAGAATTATTACTTGATTTCAATTTTATTACTGAAAAACAGCTTAATGAGGC
CCTTAAAAAACAGAATAAGTCAGGAAAAAAACTGGGAGAAATCCTGGTTGAATCAGGCTATCTCAATGAAAATGATTTAA
TACAGGTCCTGGAGTTTCAGCTGGGTATTCCCCATGCTGACCTGAACAAATATGTAATCAACCCTCATCTGGCCCAGTAT
ATACCTGAAAATATAGCCCGGCGTCATAATGTTGTTCCCCTTGAAAAGAAAAATGGCAAGCTTAAGGTTGCCATGGTTGA
TCCAACCAATCTTGTCGCCATAGAGGATATTGAAATGACTTCAGGGTTAAAGGTAGAACCCCTGATTGCTTCCCGGAAGA
ATATAAAAATGGCTTTAAACCAGATTTATTCAGTTAATGATTCAGATGCGGCCGAAGTATTTGCCAGCTTAAATGAGGTT
ACTACCAAAACTAATGAAGAACCTGAATTAAATGAATTAAAAGAAATGATAGAGGATGCCCCTATCGTTAGACTGGCCAA
TTTAATTATTAATCAGGCTATCCAGATGAAGGCCAGTGATATTCACATTGAACCCCAGGAGGACCAGGTCAGGGTCAGGT
ACAGGGTTGATGGTGTTTTACGGGAAAATATGACGGTTCCCAAACACAGTCAGGCGGCCCTGATTTCAAGGTTGAAGATA
ATTGCTGACCTTGATATTACCGAGAGAAGGGTTCCCCAGGATGGTAGGATAGAGCTCAATGTCAGCGGGGTCAAAATAGA
TATGAGGGTTTCAACCCTTCCCACAGTTTATGGGGAAAAGGTTGTTATCAGACTTTTAAATAAAGAAGAGAAACTATTAC
AGATTGAACAACTGGGATTCAGCGAGACCAATTTAAGCAGGTTTATGAAACTTATTAAGCAACCCCACGGAATTATCCTG
GTTACCGGACCCACCGGAAGTGGTAAATCAACTACCCTTTTTGCTGCTTTGAATAAACTCAATACACCTGAAAAGAACAT
AATTACTGTTGAGGATCCGGTTGAATACCAGCTTCGTGGTATTAATCAGGTTCAGGCCAATTCCAGGGTTGGGTTAACTT
TCGCCAGTGCCTTACGGTCAATCTTGAGGCAGGACCCGGATATCGTAATGGTCGGTGAGATCAGGGATGAGGAGACGGCT
CGCATAGCGGTCCGGGCTGCCCTGACCGGACATCTGGTTCTGAGTACCCTCCATACCAATGATGCCGTAAGCTCAGTTAC
GCGACTTATTGATATGGGCATTCCACCTTATCTGGTGGCCTCATCTGTAATCGGGGTTGTGGCTCAGAGACTGGTCCGGA
GGTTATGTACCTGTAAGGAAGAGTATGTTCCTGGACCAGAAGAAATGGAATTTCTCCAGGTTAATGATATTGGAAAATTG
CAACGTCCTGAAGGCTGTAAAAAATGCCATTCTACAGGCTACAGGGGTCGTCTTCCGGTCCATGAAATATTAATTATGGA
TAGGAAATTGAGAGAAATGATTGTAAATGGAGAGGGGGAATCTGTTATAAAGAAATATGCCCGGAAAGCAGGAATGCTAA
CTTTAAAAGAAGATGGGGTTAATAAGGTAATAGAAGGGTTAACTTCATATGAAGAACTGGCAAGGGTAGTTAGTTAG

Protein sequence : 
MTRTHIKKLGELLLDFNFITEKQLNEALKKQNKSGKKLGEILVESGYLNENDLIQVLEFQLGIPHADLNKYVINPHLAQY
IPENIARRHNVVPLEKKNGKLKVAMVDPTNLVAIEDIEMTSGLKVEPLIASRKNIKMALNQIYSVNDSDAAEVFASLNEV
TTKTNEEPELNELKEMIEDAPIVRLANLIINQAIQMKASDIHIEPQEDQVRVRYRVDGVLRENMTVPKHSQAALISRLKI
IADLDITERRVPQDGRIELNVSGVKIDMRVSTLPTVYGEKVVIRLLNKEEKLLQIEQLGFSETNLSRFMKLIKQPHGIIL
VTGPTGSGKSTTLFAALNKLNTPEKNIITVEDPVEYQLRGINQVQANSRVGLTFASALRSILRQDPDIVMVGEIRDEETA
RIAVRAALTGHLVLSTLHTNDAVSSVTRLIDMGIPPYLVASSVIGVVAQRLVRRLCTCKEEYVPGPEEMEFLQVNDIGKL
QRPEGCKKCHSTGYRGRLPVHEILIMDRKLREMIVNGEGESVIKKYARKAGMLTLKEDGVNKVIEGLTSYEELARVVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 5e-97 45
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-97 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hore_05970 YP_002508349.1 Tfp pilus assembly protein PilB VFG0182 Protein 4e-101 49
Hore_05970 YP_002508349.1 Tfp pilus assembly protein PilB VFG1876 Protein 4e-93 49
Hore_05970 YP_002508349.1 Tfp pilus assembly protein PilB VFG2048 Protein 6e-98 45
Hore_05970 YP_002508349.1 Tfp pilus assembly protein PilB VFG1880 Protein 3e-95 44