Gene Information

Name : Ccel_2048 (Ccel_2048)
Accession : YP_002506374.1
Strain : Clostridium cellulolyticum H10
Genome accession: NC_011898
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2405699 - 2407012 bp
Length : 1314 bp
Strand : -
Note : KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SM

DNA sequence :
ATGTCAGGCGTTAACCTATTAAAATACAGAGAAGCATTAAAGTCAAAAGAATATATAGATTATATCGGAAAGGTATCAAA
GGTTGTCGGACTTACAATAGAATCGGACGGTCCGCAGGTAAGTATAGGTGATCTTTGTAATATACACATTATCGGTGGCA
GTAAGCTTAAAGCGGAGGTAGTGGGCTTTAAGGATGAAAAGGTTTTGTTAATGCCCTTGGGTGAAATGACGGGTATAGGG
CCTGGAAGTACTGTTTCAGCCAATGGAGACATATTGAAGGTTGCAGTAGGGCCTCAACTGGTAGGCAGAGTTTTAGACGG
TTTGGGAAATCCCATAGACGACAAGGGGAGCCTTCAATCAAAACACTATTATAAAACTGATAATAAGCCACCTAATCCTT
TGACCAGAAAAAGAATATCGGAGCCTTTACCGTTGGGGGTAAGAGCCATTGATGGACTTCTAACAATAGGAAAAGGACAG
AGAGTTGGCATTTTTGCCGGAAGTGGTGTTGGTAAGAGTACTTTGATGGGTATGGTTGCCAGAAACACAAAGGCTGATAT
AAATGTTATTGCCTTGATAGGAGAACGAGGAAGAGAAGTTAGAGAATTTTTGGAAAGAGATTTAACGGATGAAGGTCTTG
CAAGGTCGGTTGTCGTGGTAGCAACATCAGACCAGCCGGCACTAATAAGGCTTAAAGGAGCAATGGTTGCTACTGCAATC
GCTGAATACTTCAGGGATTGCGGAAAGGATGTACTGCTTTTGATGGATTCTCTGACAAGGTATGCAATGGCACAAAGAGA
AGTAGGACTTTCTATAGGAGAGCCTCCTGTGTCAAGGGGATATACACCATCGGTTTTCTCAGTTTTTCCAAAATTACTTG
AGAGAGCAGGGACTTCTGACAAAGGTTCTATAACGGGTTTATACACGGTACTGGTAGACGGTGATGATCTTACGGAGCCT
GTAACTGATACGGCAAGAGGAATTCTGGACGGACATATTGTTCTGTCCAGATCGATGGCAAATAAAAATCATTATCCTGC
TATTGATGTTCTTGCAAGCGTCAGCAGGGTTATGGGGGACATTATTGATAAAGAACATAAAAAGTCTGCCAATGAAATAA
AGAAAGTAATGGCTGTACATAGAGATTCTGAGGATTTAATAAATATAGGTGCTTATGTAAAAGGGAGCAATGAGAAGATA
GATTATGCAATTGAGTGTATTGAGGATATAACTTCGTTTCTTCAACAGGAAACCGATGAAAAAGTTTCATTTGAAGATAT
ACATTCACAGGTACTTAGTTTACTGAAACAGTAA

Protein sequence :
MSGVNLLKYREALKSKEYIDYIGKVSKVVGLTIESDGPQVSIGDLCNIHIIGGSKLKAEVVGFKDEKVLLMPLGEMTGIG
PGSTVSANGDILKVAVGPQLVGRVLDGLGNPIDDKGSLQSKHYYKTDNKPPNPLTRKRISEPLPLGVRAIDGLLTIGKGQ
RVGIFAGSGVGKSTLMGMVARNTKADINVIALIGERGREVREFLERDLTDEGLARSVVVVATSDQPALIRLKGAMVATAI
AEYFRDCGKDVLLLMDSLTRYAMAQREVGLSIGEPPVSRGYTPSVFSVFPKLLERAGTSDKGSITGLYTVLVDGDDLTEP
VTDTARGILDGHIVLSRSMANKNHYPAIDVLASVSRVMGDIIDKEHKKSANEIKKVMAVHRDSEDLINIGAYVKGSNEKI
DYAIECIEDITSFLQQETDEKVSFEDIHSQVLSLLKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 8e-107 55
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-103 53
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 5e-103 53
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-103 52
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-102 52
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-103 52
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 7e-103 52
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 7e-103 52
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-104 51
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-104 51
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-89 51
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-92 51
escN AAC38383.1 EscN Virulence LEE Protein 3e-89 50
escN AAK26715.1 EscN Virulence LEE Protein 3e-90 50
escN AAL57542.1 EscN Virulence LEE Protein 3e-90 50
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-90 50
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-89 50
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-90 50
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-89 50
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-89 50
escN AAC31513.1 L0034 Virulence LEE Protein 2e-89 50
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-90 50
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-89 50
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-90 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-87 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-87 49
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-87 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-87 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 9e-87 49
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-87 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-87 49
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-79 47
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-84 47
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-81 46
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 6e-82 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-78 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-80 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-89 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-77 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-77 43
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-82 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-82 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-83 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-70 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-70 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-70 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-70 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-73 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 7e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0048 Protein 2e-105 55
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG2144 Protein 3e-109 54
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0192 Protein 1e-108 54
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0390 Protein 7e-108 53
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG1254 Protein 3e-103 51
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0730 Protein 2e-89 50
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0812 Protein 9e-90 50
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG2499 Protein 3e-93 50
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0515 Protein 8e-88 49
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG2331 Protein 2e-89 47
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG2459 Protein 3e-76 43
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG1778 Protein 7e-73 43
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG0555 Protein 9e-71 42
Ccel_2048 YP_002506374.1 ATPase FliI/YscN VFG1008 Protein 4e-68 41