Gene Information

Name : Ccel_1829 (Ccel_1829)
Accession : YP_002506158.1
Strain : Clostridium cellulolyticum H10
Genome accession: NC_011898
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2183312 - 2184124 bp
Length : 813 bp
Strand : +
Note : PFAM: integrase; KEGG: afl:Aflv_2378 transposase

DNA sequence :
ATGTGCCGACTATTAAATATATCTCGAAGCGGTTATTATGCTTGGGTTAAAAGACCTGAAAGCTTACGTAAGAAAAGGAA
TACAGAACTCCTTGAGAAAATCAGAAGAATTCACAAGGTATCCCGCGAAACTTACGGAAGCCCCCGAGTAACCAATGCCT
TAAAGAATGAAGGCATAAAATGTGGCAAAAATCGTATAGCCAAACTGATGAAGGAAAATAATATTGCTGCTAAAACCAGG
AAGAAATTTAAGGCTACAACTAATTCAAATCACAATTACCCAGTTGCAGATAATATCCTAAATCAGGACTTTACAGCTTA
TAAGCCTAATCAAATCTGGGTTGCAGATATTACTTATATACCAACAGATGAAGGTTGGCTCTACTTGGCTGCCATTATTG
ATCTCTATAACAGAAAAGTTGTTGGATGGGCAATGGATAGTACTATGACAAAACAGCTTTGTATAGATGCTTTAAAGCAA
GCTATAGGTCGCCAAAGACATCCCAAAGGGGTTATTCATCATTCCGACAGAGGGGTTCAGTATGCCAGCAAGGAATACCA
GAAAGTGCTGAACAGCAATGGTTTCACAGCAAGTATGAGCCGTAAGGGTAACTGTTACGACAATGCTTGTATGGAATCAT
TCTTTGGTACTCTTAAAACGGAGCTTATTTACTTAACAAGGTTCAAAACAAGGGCTGAGGCCCGTCTGGCTATCTTTGAA
TATATTGAAGTCTTTTATAATCGGATACGATTACATTCAAAGCTTGGCTATAAGTCACCTGTGGAATTCGAAAAGCAAAA
CAAAGCGGCTTAA

Protein sequence :
MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRETYGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTR
KKFKATTNSNHNYPVADNILNQDFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ
AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRAEARLAIFE
YIEVFYNRIRLHSKLGYKSPVEFEKQNKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-56 54
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-56 54
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-55 53
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-55 53
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-55 53
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-55 53
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-56 53
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 4e-55 53
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-55 53
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-59 49
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-59 49
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-59 49
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 8e-49 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 7e-49 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-48 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-48 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ccel_1829 YP_002506158.1 integrase VFG1706 Protein 7e-56 53
Ccel_1829 YP_002506158.1 integrase VFG1631 Protein 4e-49 45