Gene Information

Name : Ccel_1823 (Ccel_1823)
Accession : YP_002506152.1
Strain : Clostridium cellulolyticum H10
Genome accession: NC_011898
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2179709 - 2180521 bp
Length : 813 bp
Strand : -
Note : PFAM: integrase; KEGG: afl:Aflv_2378 transposase

DNA sequence :
ATGTGCCAAATACTAAAAATATCAAGAAGCGGTTATTATGCTTGGATTAAAAGGCCTGAAAGCTTGCGCAAGAAAAGGAA
TGTGGAACTTCTTGAAAAAATCAGAAACATTCACAAAGTATCCCGTGAAACCTATGGAAGCCCCCGGATAACCAAGGCTT
TAAAGAATGAAGGCATAAACTGTGGTAAAAATCGTATAGCTAAACTGATGAAGGAAAATAATATTACTGCTAAAACTAGG
AAGAAGTTTAAGGCTACAACTAATTCAAAGCACAATTACCCGGTTGCAGATAATATCCTAAATCAGGACTTTACAGCTTC
TAGGCCTAATCAAATCTGGGTTGCAGATATTACTTATATTCCTACAGACGAGGGTTGGCTCTATTTGGCTGCCATTGTTG
ATCTCTACAACAGAAAAGTTGTTGGATGGGCAATGGATATCACTATGACAAAACAGCTTTGTATAGATGCTTTAAAGCAA
GCCATCGGCAGGCAGAGACCATCAAATGGAGTGATTCATCATTCCGACCGAGGGGTCCAATATGCCAGCAAGGAATATCA
GAAAGTACTGAAAAGCAATGGTTTTACAGCAAGTATGAGTCGCAAGGGTAACTGTTACGATAATGCCTGTATGGAATCAT
TCTTTGGAACTCTCAAAACGGAGCTTATTTACTTAACAAGGTTCAAAACAAGGACTGAGGCCCGTCTGGCTATCTTTGAG
TATATTGAAGTCTTTTATAATCGGATACGATTACATTCAAAGCTTGGCTATAAGTCGCCTGTGGAATTTGAAAAGCAAAA
CAAAGCTGCTTAA

Protein sequence :
MCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRETYGSPRITKALKNEGINCGKNRIAKLMKENNITAKTR
KKFKATTNSKHNYPVADNILNQDFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQ
AIGRQRPSNGVIHHSDRGVQYASKEYQKVLKSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRTEARLAIFE
YIEVFYNRIRLHSKLGYKSPVEFEKQNKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-56 53
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 5e-56 53
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-56 53
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-56 53
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-56 53
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-56 53
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-56 53
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 4e-56 53
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-55 52
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 9e-59 49
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-59 49
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-59 49
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-48 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 6e-47 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-47 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ccel_1823 YP_002506152.1 integrase VFG1706 Protein 2e-56 53
Ccel_1823 YP_002506152.1 integrase VFG1631 Protein 6e-49 45