|
Name : smpB (A2cp1_3821) Accession : YP_002494211.1 Strain : Anaeromyxobacter dehalogenans 2CP-1 Genome accession: NC_011891 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 4245859 - 4246350 bp Length : 492 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAAGGGCAAGGCCGGCGGCAAGGCGGCGGACGCCGCGGAGAAGGTGGCGGCGTCCAACCGCCGCGCGCGCTTCGACTA CGACGTCGAGGACACCTGGGAGGCCGGGCTGGTGCTCACCGGCAGCGAGGTGAAGTCGCTGCGCGAGGGGAACGTCAACC TGTCCGACGCGTACGCGATGCCGCGCGGCGAGGAGCTGTGGCTCCTGAACTGCCGCATCGGCGAGTACCAGCAGGCGGCG CACTTCGGCCACGCGCCGCTGCGCGACCGGAAGCTCCTCATGAACCGGGCCGAGATCGACCGCGTCCGCGGCAAGGTCGA GCAGCGCGGCTACACGCTCGTGCCGCTCCGGATCTACTTCAAGCAGGGCTGGGCCAAGGTGGAGCTGGGCCTGGCGCGCG GGCGCTCGCACGAGGACCGGCGCGGGGCCATCGCCGAGCGGGAGTCGAAGCGCGAGATGGACCGGGCGCTCGCGCGGGGC CGGCGTCGCTAG Protein sequence : MKGKAGGKAADAAEKVAASNRRARFDYDVEDTWEAGLVLTGSEVKSLREGNVNLSDAYAMPRGEELWLLNCRIGEYQQAA HFGHAPLRDRKLLMNRAEIDRVRGKVEQRGYTLVPLRIYFKQGWAKVELGLARGRSHEDRRGAIAERESKREMDRALARG RRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-26 | 49 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 4e-29 | 46 |
