Gene Information

Name : A2cp1_2562 (A2cp1_2562)
Accession : YP_002492965.1
Strain : Anaeromyxobacter dehalogenans 2CP-1
Genome accession: NC_011891
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2840179 - 2841537 bp
Length : 1359 bp
Strand : +
Note : KEGG: ank:AnaeK_2466 ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA AT

DNA sequence :
GTGACCCTGCTGGATCGCGACGCCCTCGCCCGCGCGCTCGCCGAGGCCGATCCCACCCCGCTCACCGGGACGGTGGTGCG
GGCGGCCGGCCTGCTCGTCGAGGCGCTCCTCCCCCAGGTGCCGGTGGGGACGGCCTGCGAGATCCACGCGCAGGACGGCG
CGGTGGTGCTCGCGGAGGTGATCGGGTTCCAGGGCGGCACGGCGCGGCTCATGCCGCTGTCCGGGATCCAGGGCGTGGCG
GAGGGCTGCGCGGTGGTGCCGCGCGCCAGCGCGGATCGCATCGCGGTGGGCGAGGCGCTGCTCGGCCGCGTGGTGGACGC
GTCGCTCCGCCCGGTGGACGGCGGCGCGGTGCCCATGCTGCGCCAGCGCACCGCGCTGCACGCCTCCCCGCCGCCCGCGC
TCTCGCGCCGCCGGGTGGAGCGGGCCGTGCCGCTCGGCATCCGCGCGATCGACGCGTGCCTGACGGTCGGCGAGGGCCAG
CGCATCGCGGTGATGGCCGGTCCGGGCGTGGGCAAGAGCGTGCTGCTCGGGATGCTGGCGCGCTCCGCCACCGCGGACGT
GGTGGTGGTCGGGCTCATCGGCGAGCGCGGCCGCGAGGTGCGCGAGTTCGTGGAGCGCGACCTCGGGCCGGGCCTGGCCC
GCGCGGTCGTGGTGGTGGCCACCAGCGACGCCTCGCCGCTCGAGCGGCTGCGCGCCGCCATGGCGGCGACCGCGGCCGCG
GAGTGGTTCCGAGGCCGCGGCCGGCGGGTGCTCCTGCTGGTGGACTCGCTCTCGCGCGTGGCCCAGGCGCAGCGCGAGAT
CGGCCTCGCCGCGGGCGAGCCTCCCACCACCCGCGGCTACCCGCCGTCGGCGTTCGCGATCCTGCCCCGCCTGGTCGAGC
GCGCCGGCAACGACGCCGGCCCGGGCAGCATCACCGCGTTCTACACGGTGCTGGCGGAGGGCGACGACCACGCCGGCGAT
CCCATCGCCGACGCCGCGCGCGCCACGCTGGACGGCCACCTGGTGCTGTCGCGCCGCCTGGCCGAGTCCGGCCACTTCCC
GGCCATCGACGTGCTCGCGTCGGTGTCGCGCGTGATGAACGACATCGTTCCGGCGGAGCATCGCGCCCTGGCCCGCGAGG
CGCGCGAGGTGCTCTCGGCGCACCGCGAGGCCGCCGACCTGGTCGAGGTGGGCGCGTACGCGGCGGGGTCGAACCCGCGC
GTCGACCGCGCGCTCCGCTGCATCGAGCCGCTGCGGGCGTTCCTCCGGCAGGACCCGGCGGAGCGGACCCCCATGCCCGA
GGCGCTGGAGCGCCTGGCGCGGCTGCTGGCCCCGCCCGCGGCAGCCCCGCCCGCGAGGAAGGAGGCGGCGCATGGCTAG

Protein sequence :
MTLLDRDALARALAEADPTPLTGTVVRAAGLLVEALLPQVPVGTACEIHAQDGAVVLAEVIGFQGGTARLMPLSGIQGVA
EGCAVVPRASADRIAVGEALLGRVVDASLRPVDGGAVPMLRQRTALHASPPPALSRRRVERAVPLGIRAIDACLTVGEGQ
RIAVMAGPGVGKSVLLGMLARSATADVVVVGLIGERGREVREFVERDLGPGLARAVVVVATSDASPLERLRAAMAATAAA
EWFRGRGRRVLLLVDSLSRVAQAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGD
PIADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPAEHRALAREAREVLSAHREAADLVEVGAYAAGSNPR
VDRALRCIEPLRAFLRQDPAERTPMPEALERLARLLAPPAAAPPARKEAAHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-61 51
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 4e-61 51
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-61 51
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-61 51
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-61 51
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-61 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 7e-61 51
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-61 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-61 51
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-61 51
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-67 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-53 48
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-53 48
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-53 48
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-53 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-53 48
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-53 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-54 47
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-54 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-49 46
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-53 46
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 8e-48 46
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 8e-48 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-55 46
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-57 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-54 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-54 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-54 44
invC AAS66861.1 InvC Not tested SSR-2 Protein 1e-46 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-45 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-52 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-52 43
escN AAC31513.1 L0034 Virulence LEE Protein 4e-55 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-55 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-54 43
escN AAC38383.1 EscN Virulence LEE Protein 3e-55 43
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-54 43
escN AAK26715.1 EscN Virulence LEE Protein 1e-54 43
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 9e-55 43
escN AAL57542.1 EscN Virulence LEE Protein 1e-54 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-55 43
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-55 43
escN CAI43874.1 EscN protein Virulence LEE Protein 9e-55 43
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-54 43
escN CAC81862.1 EscN protein Virulence LEE II Protein 8e-55 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-42 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 6e-42 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-42 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-42 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 7e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG2331 Protein 7e-68 52
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0192 Protein 3e-68 52
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG1254 Protein 4e-71 52
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG2499 Protein 1e-62 52
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0390 Protein 6e-64 50
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0515 Protein 8e-54 48
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0048 Protein 2e-65 48
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG2144 Protein 2e-62 46
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG2459 Protein 3e-45 44
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0812 Protein 2e-55 43
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0730 Protein 2e-55 43
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG0555 Protein 3e-42 42
A2cp1_2562 YP_002492965.1 ATPase FliI/YscN VFG1008 Protein 3e-46 41