|
Name : lysS (Achl_0329) Accession : YP_002486418.1 Strain : Arthrobacter chlorophenolicus A6 Genome accession: NC_011886 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 349023 - 350561 bp Length : 1539 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGATTGTGACTTCCCAAAACACCCCCACTCCCAAGAACGCCCCCGAGCCGCTCGACGCCAGCGAGCAGATGCGCATCCG CATGGAAAAGCGCGCCAAACTCCTCGAGCGCGGCGCCGAGGCGTACCCGGTGGGTGTGGAGCGCACGCACTCCCTGGCGG AAGTCCGCGAGAAGTACGCGCACCTGGAGGCTGACGAAACCACCGGAGACGTTGTAGGTGTCACCGGCCGCGTGGTGTTC GTCCGCAACACCGGCAAGCTCTGCTTCGCCACCCTCCAGGAGGGCGGCACCGACGGCAAGGGAACCCGCCTGCAGGCCAT GCTGAGCCTCGCCAACGTGGGTGAGGAAGCCCTGGCCGACTGGAAGGCCCTGGTTGACCTCGGCGACCACGTGTTCATCA AGGGCGAGGTCATCTCCTCCCGCCGCGGTGAGCTCTCCGTCATGGCCGAATCGTGGGGCATGGCTTCCAAGGCACTCCGC CCGCTGCCCGTGCTGCACGCGGAACTGAACGAGGAAACCCGCGTCCGCCAGCGCTACGTGGACCTGATGGTCCGCGACGA AGCCCGTGAAATGGTCTACACGCGCGCCGCGATCACGCGTTCCATCCGCGAAACGTTGTTCCGCCACCGGTACGTCGAGG TGGAGACGCCCATCCTCCAGCTGGTCCACGGCGGTGCCCTGGCGCGGCCCTTCGAGACGCACATGAACGCTTTCGACCAG AAGATGACCCTGCGGATCGCCACCGAGCTGTACCTCAAGCGCGCCGTGGTGGGCGGCATCGACCGCGTTTACGACATGGG CCGCGTCTTCCGCAACGAGGGCGTTGACTCCACTCACAGCCCCGAGTTCACCACCCTCGAGTGCTACGAGGCCTGGGCGG ACCAGTTCGTCATGGCAGAGCGCATCAAGGAGATCATCCTCGACGCCGCCGACGCCGTGGGTGCCGGCCGCACCGTCCAG ACCGAGGCCGGGGAGATCAACCTCGACGGCGACTGGGCCTGGCTGGCCGTCTACCCGGGCTTGTCCGACGCCGTTGGCCA GGAAATCACGCCGGACACTCCGCTAGAGGTGCTTCGCGATATTGCCGCCAAGCATGAGGTGAAGGTGGACCCCAAGTGGG ACGCCGAGAAGACGGTGGTGGAACTGTTCGGCGAGATCGTCGAGCCCACGCTGCTGAACCCCACCTTTGTCTACGACTAC CCGCCCTCCGCCCAGCCTCTGGCCCGCCCGCACCGCGAGGACGGGCGCCTTATTGAGGCCTGGGACCTCATCATCGGCGG CATGGAGCGGGGCACCGCGTTCTCCGAGCTGATCGACCCGGTAATCCAGCGCGAGCGTCTCACCGAGCAGTCACGCCACG CCGCCGCCGGCGACGACGAAGCAATGCAGCTGGACGAGGACTTCCTCCGCGCGCTCGAGTACGGTGCCCCGCCCATGGGC GGCATCGGCCTGGGCATCGACCGCCTGGTGATGCTGTTCACCGGCGCCGGAATCCGGGAAACCATCCTTTTCCCCCTCCT TAAGCCTGAAGGGCACTGA Protein sequence : MIVTSQNTPTPKNAPEPLDASEQMRIRMEKRAKLLERGAEAYPVGVERTHSLAEVREKYAHLEADETTGDVVGVTGRVVF VRNTGKLCFATLQEGGTDGKGTRLQAMLSLANVGEEALADWKALVDLGDHVFIKGEVISSRRGELSVMAESWGMASKALR PLPVLHAELNEETRVRQRYVDLMVRDEAREMVYTRAAITRSIRETLFRHRYVEVETPILQLVHGGALARPFETHMNAFDQ KMTLRIATELYLKRAVVGGIDRVYDMGRVFRNEGVDSTHSPEFTTLECYEAWADQFVMAERIKEIILDAADAVGAGRTVQ TEAGEINLDGDWAWLAVYPGLSDAVGQEITPDTPLEVLRDIAAKHEVKVDPKWDAEKTVVELFGEIVEPTLLNPTFVYDY PPSAQPLARPHREDGRLIEAWDLIIGGMERGTAFSELIDPVIQRERLTEQSRHAAAGDDEAMQLDEDFLRALEYGAPPMG GIGLGIDRLVMLFTGAGIRETILFPLLKPEGH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 5e-112 | 51 |
