Gene Information

Name : Achl_2976 (Achl_2976)
Accession : YP_002489026.1
Strain : Arthrobacter chlorophenolicus A6
Genome accession: NC_011886
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 3325920 - 3326708 bp
Length : 789 bp
Strand : -
Note : KEGG: kra:Krad_1666 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
GTGGCTGCCTGGGCGGGCCTGCTCGCCGTCGTCCTCGTCCTGCTGGCCGCCTGGCTGGGCGCCCCCGCCGGGCACGCCGC
ACCGTTGCCGCCCACGCCGCCCACGGATCCGGCCCAGCCCGGCAGCGGCAACGTCAGCATCGAGATCAACGGCCTGGACG
GCCAGCCCTCCACCGCCGTCGTCACCCTGATCGGTATCACCCTGCTGTCCGTGGCGCCGGCGCTGCTGCTGATGATGACG
TCCTTCACCAAGATCTTCGTGGTGCTGGCCATGACCCGGAATGCGTTGTCGCTGCCGTCCATTCCGCCCAACCAGGTGCT
CGCCGGCCTGGCCCTGTTCCTGTCCCTGTTCGTCATGTGGCCTGTCCTGACGGAGATCAACACGGACGCGGTGCAGCCTT
ATTTGAACGGCAACCTCGACTTCAACGGTGCCTTCTCCGCCGGCGCGGGCCCGCTGCAACAGTTCATGCTGGGGCATACC
CGCGAAGAGGACATCGCCCTGATGACCCGCGCGGCCCGGATGCCCAACCCGGAGAATCCCGGGGCCGTACCCCTGCAGAC
CCTCATCCCGGCGTTCATGATCTCGGAGTTGCGGGCGGCGTTCATCATCGGGTTCGTCATCTTCATCCCGTTCCTGGTGA
TCGACCTGGTGGTCTCGGCAGCCCTGATGTCCATGGGCATGATGATGCTCCCGCCGGTGATGATCTCGCTGCCGTTCAAG
ATCCTGCTGTTCATCCTGGTGGACGGCTGGGGCCTGGTTATCACGTCCCTGATCCAGAGCTACACCTGA

Protein sequence : 
MAAWAGLLAVVLVLLAAWLGAPAGHAAPLPPTPPTDPAQPGSGNVSIEINGLDGQPSTAVVTLIGITLLSVAPALLLMMT
SFTKIFVVLAMTRNALSLPSIPPNQVLAGLALFLSLFVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHT
REEDIALMTRAARMPNPENPGAVPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDLVVSAALMSMGMMMLPPVMISLPFK
ILLFILVDGWGLVITSLIQSYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-20 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-20 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-20 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 8e-24 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-21 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-22 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-15 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-15 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-24 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-16 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-24 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-16 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-21 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-16 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-16 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-24 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-24 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG2338 Protein 5e-43 56
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-44 54
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-43 52
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG1259 Protein 9e-45 51
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-23 42
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-21 42
Achl_2976 YP_002489026.1 flagellar biosynthetic protein FliP VFG0519 Protein 8e-22 41