Gene Information

Name : Cyan7425_3742 (Cyan7425_3742)
Accession : YP_002484422.1
Strain : Cyanothece sp. PCC 7425
Genome accession: NC_011884
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3727382 - 3728173 bp
Length : 792 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amr:AM1_4053 two-component transcriptional regulator

DNA sequence : 
ATGAAGCCCCGCATACTTGTCATTGATGATGATCCGGCAATCGCTGAACTGGTTGCCATCAATCTGGAAATGGCCGGCTA
TGATGTCAGCCAAGCGGCCGATGGCGTCAAAGGCCAGGCCCTGGCTGTTCAGTTGATGCCCGATCTGATCATGTTGGATC
TGATGCTGCCCAGGGTGGATGGCTTTACAGTTTGTCAACGTCTTCGCCGGGATGAGCGGACCTCTGCCATTCCCATTCTG
ATGCTCACGGCTCTGAGTCAGACCCAGGATAAAGTGGAGGGGTTCAATGCGGGTGCAGACGACTATCTGACCAAACCCTT
TGAGATCGAGGAAATGCTGGCCCGGGTGCGTGCCCTCTTGCGGCGAACCGATCGCATTCCCCAGGCAGCGAAGCACAGCG
AAATTCTCAGCTATGGTCCACTCACCCTGATCCCAGAGCGGTTTGAAGTCGTCTGGTTGGATAAGGTGATCAAATTAACC
CGACTGGAGTTTGAGTTGCTCCACTGTCTGCTGCAGCGCCATGGTCAAACCGTTGCTCCCAGTGAAATCCTCAAGGAAGT
GTGGGGCTACGATCCCGACGATGACATTGAAACCATCCGTGTGCATGTTCGTCATCTCCGGACCAAGCTAGAACCCGATC
CCCGTCATCCCCGTTACATCAAGACCGTCTACGGTGCCGGTTACTGCCTGGAATTACCCAGTTTTAACCAAGCGATGGAG
GAAGCTGAGGCGACGGGGCTGGGAGGTGGCAATAGCTGGGACGGAAACCAGAGCCCTTCTGATGCGGCCTAG

Protein sequence : 
MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFTVCQRLRRDERTSAIPIL
MLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTDRIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLT
RLEFELLHCLLQRHGQTVAPSEILKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSFNQAME
EAEATGLGGGNSWDGNQSPSDAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 4e-35 44
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 5e-25 43
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-35 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 9e-36 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 1e-29 42
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-33 45
Cyan7425_3742 YP_002484422.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-23 41