Gene Information

Name : Cyan7425_3260 (Cyan7425_3260)
Accession : YP_002483948.1
Strain : Cyanothece sp. PCC 7425
Genome accession: NC_011884
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3222933 - 3223817 bp
Length : 885 bp
Strand : -
Note : PFAM: transport system permease; ABC transporter; KEGG: syn:sll1600 ABC-type manganese transport system permease

DNA sequence : 
GTGAATGAGTTAGTGACAAGTTTTCCCCTCTGGAATTGGTTAGTGGAACCCTTAAAATACCCCTTTCTGGTCCAGGCCCT
TTGGGTGAGTGCTTTCGTGGGAACGGTCTGTGCGGTGTTGTCCTGCTATGTCACTCTGAAGGGCTGGTCGCTCATGGGGG
ATGCAGTCTCTCACTCCGTTGTCCCAGGCGTGGTGGTGGCCTATGCGCTGGGGATTCCCTTTGCCGTGGGGGCATTTTTG
TTTGGCTTTGGGGCTGTTGTAGCGATTGGCTATGTTAAGTCCAAAACTCGCCTGAAGGAAGATGCGGTGATTGGGGTAGT
GTTTACCGGCCTGTTTGCCCTGGGGCTGGTGCTGGTGACCAAAATCCCCAGTAATGTTGACCTGTTTCACATTTTGTTTG
GCAATGTATTGGGCATTTCTAAGGAAGATATTATTCAAACGCTGATTGCCGGCCTGCTGACCCTGGTGGTGATTTTGCTG
CGGCGTAAAGATCTGTTGCTGTTCTGTTTTGACCCGAATCACGCCAAGGCCATTGGTCTGAATACGCAGTGGATGTATTA
CACTCTGCTGTCGGTGCTGGCCCTGACGATCGTAACGGCCTTACAGACGGCGGGCATTATTCTGGTGGTGGCCATGCTGG
TGACACCGGGGGCGATCGCCTATTTGTTAACCGATCGCTTCGATCGGATGCTGCTAATTTCGATCGCCAGCAGTGTATTT
TCCTGTCTGCTTGGCACCTATTTTAGCTATCACCTGGATATCTCCACGGGTGGGGCCATTGTTGTTGCTTTAACGTTGTT
ATTTATTGTGACGATGATTTTTGCCCCCAAGTACGGCATTCTCGCCCAGCAAGCCAGTCAATGGCCCCATCCGCCCACGG
GCTAA

Protein sequence : 
MNELVTSFPLWNWLVEPLKYPFLVQALWVSAFVGTVCAVLSCYVTLKGWSLMGDAVSHSVVPGVVVAYALGIPFAVGAFL
FGFGAVVAIGYVKSKTRLKEDAVIGVVFTGLFALGLVLVTKIPSNVDLFHILFGNVLGISKEDIIQTLIAGLLTLVVILL
RRKDLLLFCFDPNHAKAIGLNTQWMYYTLLSVLALTIVTALQTAGIILVVAMLVTPGAIAYLLTDRFDRMLLISIASSVF
SCLLGTYFSYHLDISTGGAIVVALTLLFIVTMIFAPKYGILAQQASQWPHPPTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-51 51
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-51 51
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-51 51
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-51 51
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-51 51
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-47 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-47 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-47 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-47 50
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-47 50
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 7e-36 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_3260 YP_002483948.1 ABC transporter BAC0442 Protein 1e-57 53
Cyan7425_3260 YP_002483948.1 ABC transporter BAC0441 Protein 2e-48 51
Cyan7425_3260 YP_002483948.1 ABC transporter BAC0351 Protein 1e-51 51
Cyan7425_3260 YP_002483948.1 ABC transporter BAC0352 Protein 6e-48 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_3260 YP_002483948.1 ABC transporter VFG0527 Protein 1e-51 51
Cyan7425_3260 YP_002483948.1 ABC transporter VFG0528 Protein 6e-48 50