Gene Information

Name : Cyan7425_0392 (Cyan7425_0392)
Accession : YP_002481145.1
Strain : Cyanothece sp. PCC 7425
Genome accession: NC_011884
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 190375 - 191136 bp
Length : 762 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tel:tlr0589 two-component response regulator

DNA sequence : 
ATGCTTTCCGCAGAAATTTCCAGCCCCACCTTTGTTCAGCCTGATAGGAAGTTAGGACAAATTCTGTTGGTAGAAGATGA
GGAGCTAATCCGAGAGACGGTCAGTTTAGCTCTGATGGAAGAAGGCTACGAAGTCATTACTGCTGCTGATGGTCGTCAGG
CTCTGGATATTCTGAATGCCCGCGTGCTGCATTCCCAGGCGATCGACTCTGCTGGTCTGGATTTGATGATTCTCGATCTG
ATGTTGCCCTACATCAACGGTCTGGATCTCTGTCGGCTGATTCGCCGGGAAGGGTGTACCTTACCTATTCTCATGCTCAG
TGCTAAAGGCAGCGAGATCGATCGGGTCGTGGGCCTGGAAGTGGGAGCCGATGACTATGTGACCAAACCCTTTGGCATGC
GCGAATTGGTGGCCCGCTGTCGAGCTCTCTTACGGCGGCAACGTGCCCAGACTCCTCCCCCCGTGCCCATTCTCAAGTTT
CGAGATCTGCAACTCTACCCACAGGAATGCCGAGTGCTGGTGAGGGGACAGGAAGTAAACCTCTCTCCCAAAGAGTTTCG
CATGCTGGAGCTGTTTATGAGCTACCCCCGTCGGGTTTGGCCGCGGGAACAACTGCTGGATAAAATTTGGGGAACAGATT
TTGTTGGAGATAGCAAAACCGTTGATGTCCATATTCGCTGGCTGAGGGAGAAAATTGAACTCGATCCCAGCCATCCCGAA
TATCTTCTGACCGTGCGCGGTTTTGGTTATCGTTTTGGCTAA

Protein sequence : 
MLSAEISSPTFVQPDRKLGQILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILDL
MLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVARCRALLRRQRAQTPPPVPILKF
RDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRVWPREQLLDKIWGTDFVGDSKTVDVHIRWLREKIELDPSHPE
YLLTVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-28 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-37 43
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 1e-40 41
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator VFG1563 Protein 9e-29 42
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator VFG1702 Protein 1e-28 42
Cyan7425_0392 YP_002481145.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-31 41