Gene Information

Name : Ddes_0769 (Ddes_0769)
Accession : YP_002479355.1
Strain : Desulfovibrio desulfuricans ATCC 27774
Genome accession: NC_011883
Putative virulence/resistance : Virulence
Product : Fis family two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 901973 - 903334 bp
Length : 1362 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis fami

DNA sequence : 
ATGACTGCAAAAACGGCCGTAAAGCTGCTGGTGGTAGATGACGACCGCAATCACCGCGAAATGCTGCGCGCCCTGCTGGA
AGAGTGGGGCTATGCCCCCGTCACCGTGGACAATGGCGAAGAAGCCGTGGCCCTGTGCCAGGAAAGCCCCTTTGACCTTA
TCCTCATGGACGTGCGCATGGGCGGCATGAGCGGCATTGAGGCCACCCGCGCCATCAAGGGGTATAATCCGGCCATTCCC
GTGCTGATCATGACGGCCTACTCCGATGTGGCCAACGCTGTGGAGGCCCTCAAGGCCGGGGCTTACGACTATCTCACCAA
GCCGCTGGCTTTTGACGCCCTCAAACTGGCTCTGGAACGCGCCCTTGACCATGCGAGCCTGCGGGACGAAGTGCGGGCCT
TGCGGCATGAGCTGGCGGCCAATGTGGATTCGCGCGATGTCATCGGTCAAAGTCCGGCCATGCGCCAGATGCTGGGGCTG
GTTTCGGCCATTGCGCCCTCAGAGGCCACCGTACTTATCACGGGTGAATCCGGCACGGGCAAAGAAGTTATCGCCAAACT
CATTCACGCCAACAGCGGCAGAAGCAAGGGGCCTTATGTGGCCGTCAACTGTGCCGCGCTGACAGAAACCCTGCTGGAAT
CCGAACTGTTCGGGCATGAAAAAGGCGCGTTCACCGGCGCGGAAAAACGCCGTGAAGGGCGTTTTCTGGCGGCCAACAAA
GGCACGATTTTTCTGGACGAGATCGGCGAAATTCCGCTGTCCATGCAGGTCAAACTGTTGCGGGTGATTCAGGAGCGCGA
ACTGCAGCGTGTGGGTGGCGACCAGAACCTCAAGGTGGACGTGCGCATTCTGGCGGCTACCAATAAGGATCTGGCGCAGG
AGGTGGACGAGGGGCGTTTTCGCCAGGACCTGTATTACCGCCTCAATGTGGTGGCCCTGCAATTGCCGCCCCTGCGCGAC
CGTCAGGAGGACATCCCCCTGCTGGCCATGCACTTTATGAAGCTTTTTGCCGAGCGCAACGGCAAAACGGTCAAGGGTTT
TACCCCTGCCGCCATGGACAGGTTGCTCAAGCACAACTGGCCCGGCAATGTGCGTGAACTGGAAAATGCCGTGGAGCGGG
CTGTGGTGCTGCTGGTGGGAGAATATATCAGCGAACGTGAACTGCCGCCCACCATTCTGGACGTGGAAGAGGAAAATACG
CGTCCGGCGCGGCTGGATTTTGCCAACATGACGCTGGAAGAAATCGAGCGCCTGGCCGTGCAGGATACGCTTGAGCAGGT
GGGCGGCAACAAGAGCGAGGCCGCGCGGCGTCTTGGCATCAACCGCAAGACGCTTTTATCGAAACTCGGGGATGGGAAGT
AG

Protein sequence : 
MTAKTAVKLLVVDDDRNHREMLRALLEEWGYAPVTVDNGEEAVALCQESPFDLILMDVRMGGMSGIEATRAIKGYNPAIP
VLIMTAYSDVANAVEALKAGAYDYLTKPLAFDALKLALERALDHASLRDEVRALRHELAANVDSRDVIGQSPAMRQMLGL
VSAIAPSEATVLITGESGTGKEVIAKLIHANSGRSKGPYVAVNCAALTETLLESELFGHEKGAFTGAEKRREGRFLAANK
GTIFLDEIGEIPLSMQVKLLRVIQERELQRVGGDQNLKVDVRILAATNKDLAQEVDEGRFRQDLYYRLNVVALQLPPLRD
RQEDIPLLAMHFMKLFAERNGKTVKGFTPAAMDRLLKHNWPGNVRELENAVERAVVLLVGEYISERELPPTILDVEEENT
RPARLDFANMTLEEIERLAVQDTLEQVGGNKSEAARRLGINRKTLLSKLGDGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-63 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-63 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ddes_0769 YP_002479355.1 Fis family two component sigma-54 specific transcriptional regulator BAC0467 Protein 2e-120 59
Ddes_0769 YP_002479355.1 Fis family two component sigma-54 specific transcriptional regulator BAC0089 Protein 2e-87 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ddes_0769 YP_002479355.1 Fis family two component sigma-54 specific transcriptional regulator VFG1214 Protein 1e-74 44
Ddes_0769 YP_002479355.1 Fis family two component sigma-54 specific transcriptional regulator VFG1249 Protein 6e-70 42
Ddes_0769 YP_002479355.1 Fis family two component sigma-54 specific transcriptional regulator VFG0116 Protein 9e-67 41